CN185059

Overview
NameCN185059
Unique NameCN185059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.222e-29
Identity = 56/127 (44.09%), Postives = 84/127 (66.14%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            Q+SWN+NY             L NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC + G+A V NRIGF+  +C   G+  G +LDC +Q+P+
Sbjct:  166 QISWNFNY--GPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.596e-29
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            Q+S+NYNY               NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG+G  + V +RIG++            D+LDCYNQ+P+
Sbjct:   86 QISYNYNYGAAGKAIGVDLL--RNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.034e-28
Identity = 59/128 (46.09%), Postives = 76/128 (59.38%), Query Frame = -1
Query:  190 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 570
            QL WNYNY  C           + P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC + G    +NRI ++  +C    + PGD+L C NQ  +
Sbjct:  179 QLRWNYNYGECGNYLGQNLL--DEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.493e-27
Identity = 57/136 (41.91%), Postives = 85/136 (62.50%), Query Frame = -1
Query:  166 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQS 570
            Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G +LDC+ Q P+  ++M+ S
Sbjct:  206 QIAYNYNYGAAGEAIGADLL--GNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.951e-27
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = -1
Query:  166 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQS 570
            Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G +LDC+ Q P+   +M+ S
Sbjct:  206 QIAYNYNYGAAGEAIGADLL--GNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.688e-16
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = -1
Query:  208 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 570
            QLSWNYNY+             N+PD++  DP++SFK+++WFW+     +     VI+D  +            G+G T  IINGG EC     A +  R+G++  +C + G+ PG++L C
Sbjct:  149 QLSWNYNYIDAGKELHFDGL--NDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILDPNQ------------GFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14
Identity = 44/121 (36.36%), Postives = 58/121 (47.93%), Query Frame = -1
Query:  208 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 570
            QLSWNYNY             L NP+ +ATD   SFK+A+WFWMT                     +V++    G+G TT  ING +EC         +RI F+  +C  FG+ PGD+L C
Sbjct:  191 QLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14
Identity = 42/121 (34.71%), Postives = 59/121 (48.76%), Query Frame = -1
Query:  208 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 570
            Q+SWNYNY             L +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG +L C
Sbjct:  191 QISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.603e-13
Identity = 40/121 (33.06%), Postives = 58/121 (47.93%), Query Frame = -1
Query:  208 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 570
            Q+SWN+NY             L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG +L C
Sbjct:  188 QISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = -1
Query:  214 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSL 570
            QL+ N+NY             + NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+     G    A   + IGF+  +C   G+  G  L
Sbjct:  243 QLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF--GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
The following BLAST results are available for this feature:
BLAST of CN185059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI10_ORYSJ1.222e-2944.09Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA1.596e-2947.24Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI8_POPTR1.034e-2846.09Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ1.493e-2741.91Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.951e-2741.91Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_DIOJA7.688e-1633.88Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIP_BETVU1.110e-1436.36Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ1.110e-1434.71Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.603e-1333.06Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI2.094e-1335.29Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185059 ID=CN185059; Name=CN185059; organism=Citrus sinensis; type=EST; length=570bp
GAGGCTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTACAATA
AGAGCGTAACAAACTAACAATTTAGTTGTCCACCTACAAGTGTGACATCT
AAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGA
TCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGTCGTT
GGTTGTAGCAATCAAGACTGTCACCAGGCTGAATCCCAAACTTGCCACAG
AAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGGCATTCCCACCTTG
GCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCG
GAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTCGATA
ATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCA
GATTGCTGACTTGAATGATAGTACTGGATCAGTAGCAAGAAGGTCTGGAT
TGTTCAACAACTCCTCTCCTAGCCCTAGGCCTTCTCCGCACCGTAAGTAA
TTGTAATTCCAAGAGAGTTG
back to top