CN185059

Overview
NameCN185059
Unique NameCN185059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:508..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.734e-13
Identity = 38/121 (31.40%), Postives = 62/121 (51.24%), Query Frame = -1
Query:  208 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 570
            QLSWNYNY  C             P+L++++P ++F++ +WFWM +  P       ++++              G+G T   ING +EC  G + AV  RI ++  +CG+ G+ PG +L C
Sbjct:  172 QLSWNYNYGACGQSLNLNLL--GQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 38/121 (31.40%), Postives = 58/121 (47.93%), Query Frame = -1
Query:  208 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 570
            Q+SWN+NY             L +PD +A  PVL+F++A+W+W        + H+  +                G+G T   ING +EC      AV NR+ ++  FC +FG+ PG +L C
Sbjct:  172 QISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.149e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = -1
Query:  304 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 441
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11
Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = -1
Query:  208 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 570
            Q+SWNYNY             L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG    A +  R+G++  +C + G+ PG +L C
Sbjct:  172 QISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.343e-11
Identity = 36/121 (29.75%), Postives = 56/121 (46.28%), Query Frame = -1
Query:  208 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 570
            Q+SWNYNY               +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC     A +  R+G++  +C +  + PG +L C
Sbjct:  183 QISWNYNYGPAGRDIGFNGLA--DPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CN185059 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 37/121 (30.58%), Postives = 58/121 (47.93%), Query Frame = -1
Query:  208 QLSWNYNYLRCXXXXXXXXXXLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 570
            QLSWN+NY             L  P+ ++ D V+SFK+A+W+WM    P       +I++              G+G T   ING +EC       V+ R+ ++T +C + G+  GD+L C
Sbjct:  173 QLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRP-------VINQ--------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
The following BLAST results are available for this feature:
BLAST of CN185059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_BRANA2.734e-1331.40Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI6_ORYSJ7.956e-1331.40Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ARAHY1.149e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]
CHIB_MAIZE1.960e-1131.40Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE3.343e-1129.75Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU5.702e-1130.58Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185059 ID=CN185059; Name=CN185059; organism=Citrus sinensis; type=EST; length=570bp
GAGGCTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTACAATA
AGAGCGTAACAAACTAACAATTTAGTTGTCCACCTACAAGTGTGACATCT
AAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGA
TCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGTCGTT
GGTTGTAGCAATCAAGACTGTCACCAGGCTGAATCCCAAACTTGCCACAG
AAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGGCATTCCCACCTTG
GCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCG
GAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCGTCGATA
ATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCAGAACCA
GATTGCTGACTTGAATGATAGTACTGGATCAGTAGCAAGAAGGTCTGGAT
TGTTCAACAACTCCTCTCCTAGCCCTAGGCCTTCTCCGCACCGTAAGTAA
TTGTAATTCCAAGAGAGTTG
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