CN185045

Overview
NameCN185045
Unique NameCN185045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB2_DROER (Tubulin beta-2 chain OS=Drosophila erecta GN=betaTub85D PE=3 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 9.025e-108
Identity = 186/239 (77.82%), Postives = 204/239 (85.36%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+HIQ GQCGNQIG KFWEV+  EH ID TG Y GD+DLQLERINVYYNEA+  +YVPRA+L+DLEPGTMDSVRSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTL L+TP++GDLNHL+SATMSGVT C
Sbjct:    1 MREIVHIQAGQCGNQIGGKFWEVISDEHCIDATGTYYGDSDLQLERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGRFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB2_CAEEL (Tubulin beta-2 chain OS=Caenorhabditis elegans GN=tbb-2 PE=2 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.539e-107
Identity = 182/239 (76.15%), Postives = 206/239 (86.19%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+H+Q GQCGNQIGSKFWEV+  EHGI P G ++G+TDLQLERI+VYYNEA+ G+YVPRAVL+DLEPGTMDSVRSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV+RKEAE CDCLQGFQ+ H              ISKIREEYPDR+M +FSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDIC+RTL L+ P++GDLNHL+S TMSGVT C
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICYRTLKLTNPTYGDLNHLVSLTMSGVTTC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB6_BOVIN (Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.626e-107
Identity = 184/237 (77.64%), Postives = 204/237 (86.08%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDP G Y GD+ LQLERINVYYNE+S  +YVPRA L+DLEPGTMDSVRSGP+GQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKE E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTL L+TP++GDLNHL+SATMSGVT
Sbjct:    1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYVPRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB6_HUMAN (Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.702e-106
Identity = 182/237 (76.79%), Postives = 204/237 (86.08%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDP G Y GD+ LQLERINVYYNE+S  +YVPRA L+DLEPGTMDSVRSGP+GQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAEL+D+VLDVVRKE E+CDCLQGFQ+ H              ISKIREE+PDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTL L+TP++GDLNHL+SATMSGVT
Sbjct:    1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLERINVYYNESSSQKYVPRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB1_BRUPA (Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 384.03 bits (985), Expect = 4.952e-106
Identity = 177/239 (74.06%), Postives = 203/239 (84.94%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+H+Q GQCGNQIG+KFWEV+  EHG+ P G Y+GD+DLQ+ERINVYYNEA+ G+YVPRAVL+DLEPGTMDS+R G +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV+RKEAE CDCLQGFQ+ H              ISKIREEYPDR+M +FSV PSPKVSD V+EPYNATLSVHQLVEN DE   +DNEALYDICFRTL L+ P++GDLNHL+S TMSGVT C
Sbjct:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGVQPDGTYKGDSDLQIERINVYYNEANGGKYVPRAVLVDLEPGTMDSIRGGEFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPKVSDVVLEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLANPTYGDLNHLVSVTMSGVTTC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB_COPC7 (Tubulin beta chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_04743 PE=3 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 6.468e-106
Identity = 182/239 (76.15%), Postives = 201/239 (84.10%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+H+Q GQCGNQIG+KFWEVV  EHGI+  G Y+G+ DLQLERI+VYYNE    +YVPRAVL+DLEPGTMDSVRSGP G +FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDRMM T+SV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALYDICFRTL LSTP++GDLNHL+S  MSG+T C
Sbjct:    1 MREIVHLQTGQCGNQIGAKFWEVVSDEHGIERDGLYKGNNDLQLERISVYYNEIGASKYVPRAVLVDLEPGTMDSVRSGPLGSLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMCTYSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLSTPTYGDLNHLVSIVMSGITTC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 8.447e-106
Identity = 181/239 (75.73%), Postives = 203/239 (84.94%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+H+Q GQCGNQIG+KFWEVV  EHGI   G+Y+G+TDLQLERI+VYYNE +  +YVPRAVL+DLEPGTMDSVRSG +G +FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE CDCLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALYDICFRTL L+TP++GDLNHL+S  MSG+T C
Sbjct:    1 MREIVHLQTGQCGNQIGAKFWEVVSDEHGIATDGQYKGNTDLQLERISVYYNEVAANKYVPRAVLIDLEPGTMDSVRSGAFGSLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLATPTYGDLNHLVSIVMSGITTC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB6_MOUSE (Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 8.447e-106
Identity = 182/237 (76.79%), Postives = 203/237 (85.65%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MREI+HIQ GQCGNQIG+KFWEV+  EHGID  G Y GD+ LQLERI+VYYNE+S  +YVPRA L+DLEPGTMDSVRSGP+GQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKE E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTL L+TP++GDLNHL+SATMSGVT
Sbjct:    1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDQAGGYVGDSALQLERISVYYNESSSKKYVPRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVT 237          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.441e-105
Identity = 181/239 (75.73%), Postives = 202/239 (84.52%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+H+Q GQCGNQIG+KFWEVV  EHGI   G+Y+G +DLQLERI+VYYNE +  +YVPRAVL+DLEPGTMDSVRSGP+G +FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE CDCLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALYDICFRTL L TP++GDLNHL+S  MSG+T C
Sbjct:    1 MREIVHLQTGQCGNQIGAKFWEVVSDEHGIATDGQYKGTSDLQLERISVYYNEVAGNKYVPRAVLIDLEPGTMDSVRSGPFGSLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLQTPTYGDLNHLVSIVMSGITTC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB3_DROME (Tubulin beta-3 chain OS=Drosophila melanogaster GN=betaTub60D PE=1 SV=2)

HSP 1 Score: 381.333 bits (978), Expect = 3.210e-105
Identity = 180/245 (73.47%), Postives = 205/245 (83.67%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASC------GRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+++Q GQCGNQIG+KFWE++  EHGID  G Y GD+DLQLER++VYYNEAS       G+YVPRA+L+DLEPGTM+SVRSGPYGQ+FRPDNFV+GQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE ENCDCLQGFQ+ H              ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLS+HQLVEN DE   +DNEALYDICFRTL +S PS+GDLNHL+S TMSGVT C
Sbjct:    1 MREIVNLQAGQCGNQIGAKFWEIISEEHGIDSNGIYVGDSDLQLERVSVYYNEASAVTRSSGGKYVPRAILLDLEPGTMESVRSGPYGQLFRPDNFVYGQSGAGNNWAKGHYTEGAELVDNVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVSNPSYGDLNHLVSLTMSGVTTC 245          
The following BLAST results are available for this feature:
BLAST of CN185045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBB2_DROER9.025e-10877.82Tubulin beta-2 chain OS=Drosophila erecta GN=betaT... [more]
TBB2_CAEEL1.539e-10776.15Tubulin beta-2 chain OS=Caenorhabditis elegans GN=... [more]
TBB6_BOVIN2.626e-10777.64Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 S... [more]
TBB6_HUMAN1.702e-10676.79Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1... [more]
TBB1_BRUPA4.952e-10674.06Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1[more]
TBB_COPC76.468e-10676.15Tubulin beta chain OS=Coprinopsis cinerea (strain ... [more]
TBB_UROFA8.447e-10675.73Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ... [more]
TBB6_MOUSE8.447e-10676.79Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1... [more]
TBB_MELLI1.441e-10575.73Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB3_DROME3.210e-10573.47Tubulin beta-3 chain OS=Drosophila melanogaster GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185045 ID=CN185045; Name=CN185045; organism=Citrus sinensis; type=EST; length=787bp
GAGGAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCA
AGAAACCCCAAAAGAAGAAAATGCGTGAAATCCTTCACATTCAAGGGGGC
CAATGCGGGAACCAAATCGGATCCAAGTTCTGGGAAGTGGTTTGCGCCGA
GCACGGCATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGC
TTGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTG
CCTAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATGGATAGCGTCAG
GTCTGGTCCGTACGGTCAGGTTTTTAGGCCCGACAATTTTGTCTTTGGCC
AGTCCGGCGCCGGAAACAACTGGGCGAAGGGGCATTATACTGAAGGAGCT
GAGCTGATTGATTCTGTGCTTGATGTTGTTCGTAAAGAAGCCGAGAACTG
CGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTCTGGGAGGAGGGACGG
GTTCCGGGATGGGAACTTTGTTGATATCAAAGATAAGAGAGGAATACCCG
GATAGAATGATGCTTACTTTCTCAGTTTTCCCATCTCCTAAGGTCTCTGA
TACTGTTGTTGAGCCTTACAACGCTACTCTCTCTGTACATCAGCTAGTTG
AAAATGCAGATGAGTGTATGGTTCTTGATAATGAAGCCCTTTATGACATC
TGTTTCCGCACTCTCNAACTCAGCACTCCAAGCTTTGGTGATCTGAATCA
TTTGATATCTGCTACAATGTCTGGAGTTACCTGTTGT
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