CN185045

Overview
NameCN185045
Unique NameCN185045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 8.297e-53
Identity = 98/239 (41.00%), Postives = 147/239 (61.51%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQL--ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MRE + +  GQ G Q+G+  WE+ C EHGI P G+   D  +    +    ++ E   G++VPRAV +DLEP  +D +R+GPY Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LIS  +S +T
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSIT 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBA3_DROME (Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.297e-53
Identity = 99/239 (41.42%), Postives = 147/239 (61.51%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQL--ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MRE + I  GQ G QIG+  WE+ C EHGI P G+   D  +    +  N +++E   G++VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+V+P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.084e-52
Identity = 99/239 (41.42%), Postives = 145/239 (60.67%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLE--RINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MRE + I  GQ G Q+G+  WE+ C EHGI P G    D  + +E    N +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H              + ++  +Y  +  L ++V+PSP+VS  VVEPYN+ LS H L+E+ D   +LDNEA+YD+    L +  P++ +LN LI   +S +T
Sbjct:    1 MREAICIHIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEIRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDLTRANLDIERPTYTNLNRLIGQVVSALT 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.084e-52
Identity = 98/237 (41.35%), Postives = 151/237 (63.71%), Query Frame = 2
Query:   74 REILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKY-QGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            RE + I  GQ G QIG+  WE+ C EHG+D  G   + + + + + +  +++E+  G++VPRA+ +DLEP  +D +R+G YG +F PD  + G+  A NN+A+GHYT G ELID VLD +RK+ ENC+ LQGF V H              + ++  E+  +  L FSV+P+P+VS +VVEPYN+ L+ H  +E +D   ++DNEA+YD+C + L +  PS+ +LN LI+  +S +T
Sbjct:    6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQQSLQAFFSESMNGKHVPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVLDRIRKQTENCEGLQGFLVFHSFGGGTGSGFSSLLMERLSVEFGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHTTLELSDCSFMVDNEAIYDLCRQKLHVERPSYSNLNRLIAQVVSSIT 242          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.084e-52
Identity = 100/240 (41.67%), Postives = 146/240 (60.83%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQL---ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MRE++ I  GQ G QIG+  WE+   EHGI P G  +          E  + +++E   G++VPRA+ +DLEP  +D VR+GPY  +F P+  + G+  A NN+A+GHYT G E++  VLD +RK A+ CD LQGF   H              + ++  EY  +  L F+V+P+P+VS +VVEPYN  L+ H  +E+AD   ++DNEA+YD+C R L +  PSF +LN+LI+  +S VT
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVT 240          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.084e-52
Identity = 100/239 (41.84%), Postives = 147/239 (61.51%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQL--ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MRE++ I  GQ G QIG+  WE+ C EHGI P G+   D  +    +  N +++E    ++VPR V +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+ C  LQGF V +              + ++  +Y  +  L F+V+PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  P++ +LN LI+  +S +T
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAEKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLT 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.084e-52
Identity = 99/239 (41.42%), Postives = 147/239 (61.51%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGD--TDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+   D  T    +  N +++E   G++VPRAV +DLEP   D VR+G Y Q++ P+  + G+  A NN+A+GHYT G E++D VLD +RK ++NC  LQGF V H              + ++  +Y  +  L+F++ P+P+V+  VVEPYN+ LS H L+E+ D    LDNEALYD+C R L +  P++ +LN L++  +S +T
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPNGQMPADNTTGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGSYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDIVLDRIRKLSDNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNLNRLVAQVISSLT 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.084e-52
Identity = 98/239 (41.00%), Postives = 147/239 (61.51%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQL--ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MRE + I  GQ G QIG+  WE+ C EHGI P G+   D  +    +  N +++E   G++VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.415e-52
Identity = 98/239 (41.00%), Postives = 147/239 (61.51%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQL--ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MRE + I  GQ G QIG+  WE+ C EHGI P G+   D  +    +  N +++E   G++VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D VLD VRK ++ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.415e-52
Identity = 95/237 (40.08%), Postives = 149/237 (62.87%), Query Frame = 2
Query:   77 EILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLE--RINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            E++HI  GQ G Q+G+  WE+   EHG+   G+   D+ +  E    + ++ E+S G+YVPR++ +DL+P  +D +R+GPY Q+F P+  + G+  A NN+A+GHYT G E+ ++VLD +RK  +NC  LQGF V H              + ++ ++Y  +  L FSV+P+P+V+  VVEPYNA L+ H  +E++D   ++DNEA+YDIC R L +  PS+  LN LI+  +S +T
Sbjct:    4 EVVHIHLGQAGTQLGNSAWELYLLEHGLTQDGRKDPDSTVAGEGGSYDTFFTESSNGKYVPRSLFVDLDPSPIDEIRTGPYRQLFHPELLISGKEDAANNYARGHYTVGKEMAENVLDRIRKITDNCHSLQGFLVFHSFGGGTGSGFGALVLERLAQDYAKKCKLEFSVYPAPRVATAVVEPYNAVLATHSTLEHSDVTFLVDNEAVYDICRRNLDIPRPSYEHLNRLIAQVVSSIT 240          
The following BLAST results are available for this feature:
BLAST of CN185045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBA4A_BOVIN8.297e-5341.00Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA3_DROME8.297e-5341.42Tubulin alpha-3 chain OS=Drosophila melanogaster G... [more]
TBA_TRYCR1.084e-5241.42Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBA8_CAEEL1.084e-5241.35Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA1_YEAST1.084e-5241.67Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA1_STYLE1.084e-5241.84Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA1_PELFA1.084e-5241.42Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA1_DROME1.084e-5241.00Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBAT_ONCMY1.415e-5241.00Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA1_NEUCR1.415e-5240.08Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185045 ID=CN185045; Name=CN185045; organism=Citrus sinensis; type=EST; length=787bp
GAGGAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCA
AGAAACCCCAAAAGAAGAAAATGCGTGAAATCCTTCACATTCAAGGGGGC
CAATGCGGGAACCAAATCGGATCCAAGTTCTGGGAAGTGGTTTGCGCCGA
GCACGGCATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGC
TTGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTG
CCTAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATGGATAGCGTCAG
GTCTGGTCCGTACGGTCAGGTTTTTAGGCCCGACAATTTTGTCTTTGGCC
AGTCCGGCGCCGGAAACAACTGGGCGAAGGGGCATTATACTGAAGGAGCT
GAGCTGATTGATTCTGTGCTTGATGTTGTTCGTAAAGAAGCCGAGAACTG
CGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTCTGGGAGGAGGGACGG
GTTCCGGGATGGGAACTTTGTTGATATCAAAGATAAGAGAGGAATACCCG
GATAGAATGATGCTTACTTTCTCAGTTTTCCCATCTCCTAAGGTCTCTGA
TACTGTTGTTGAGCCTTACAACGCTACTCTCTCTGTACATCAGCTAGTTG
AAAATGCAGATGAGTGTATGGTTCTTGATAATGAAGCCCTTTATGACATC
TGTTTCCGCACTCTCNAACTCAGCACTCCAAGCTTTGGTGATCTGAATCA
TTTGATATCTGCTACAATGTCTGGAGTTACCTGTTGT
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