CN185045

Overview
NameCN185045
Unique NameCN185045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig795 contig Csv1_Contig795:5..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB_STYLE (Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 1.300e-114
Identity = 195/239 (81.59%), Postives = 212/239 (88.70%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+HIQGGQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDICFRTL L+TP++GDLNHL+SA +SGVTCC
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMATFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAGISGVTCC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 2.897e-114
Identity = 194/239 (81.17%), Postives = 213/239 (89.12%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+H+QGGQCGNQIG+KFWEV+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MV+DNEALYDICFRTL L+TP++GDLNHL+SA +SGVT C
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRTLKLTTPTYGDLNHLVSACISGVTSC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 2.897e-114
Identity = 195/239 (81.59%), Postives = 208/239 (87.03%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREILH+Q GQCGNQIG KFWEVV  EHGIDP G Y G + +QLER+NVYYNEAS GRYVPRAVLMDLEPGTMDS+R+GP+GQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAENC CLQGFQ+CH              ISKI+EEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEN DECMVLDNEALYDICFRTL L+ PSFGDLN LIS TMSG TCC
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVVSDEHGIDPKGNYVGTSRVQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPHGQLFRPDNFIFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCACLQGFQICHSLGGGTGSGMGTLLISKIKEEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENGDECMVLDNEALYDICFRTLKLTNPSFGDLNRLISTTMSGATCC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB_TOXGO (Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 4.941e-114
Identity = 192/239 (80.33%), Postives = 213/239 (89.12%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+H+QGGQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINV+YNEA+ GR+VPRA+LMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDICFRTL L+TP++GDLNHL+SA MSGVTCC
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIDPTGTYCGDSDLQLERINVFYNEATGGRFVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 410.223 bits (1053), Expect = 6.453e-114
Identity = 193/239 (80.75%), Postives = 213/239 (89.12%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+H+QGGQCGNQIG+KFWEV+  EHG++PTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MV+DNEALYDICFRTL L+TP++GDLNHL+SA +SGVT C
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVEPTGAYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRTLKLTTPTYGDLNHLVSACISGVTAC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB_TRYCR (Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 407.527 bits (1046), Expect = 4.183e-113
Identity = 188/239 (78.66%), Postives = 212/239 (88.70%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+ +Q GQCGNQIGSKFWEV+  EHG+DPTG YQGD+DLQLERINVY++EA+ GRYVPRAVL+DLEPGTMDSVR+GPYGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDV RKEAE+CDCLQGFQ+CH              ISK+REEYPDR+M+TFS+ PSPKVSDTVVEPYN TLSVHQLVEN+DE M +DNEALYDICFRTL L+TP+FGDLNHL+SA +SGVTCC
Sbjct:    1 MREIVCVQAGQCGNQIGSKFWEVISDEHGVDPTGTYQGDSDLQLERINVYFDEATGGRYVPRAVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVCRKEAESCDCLQGFQICHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSIIPSPKVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVVSGVTCC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 5.463e-113
Identity = 193/238 (81.09%), Postives = 212/238 (89.08%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTC 784
            MREI+H+QGGQCGNQIG+KFWEV+  EHGI PTG Y+GD+DLQLERI+V+YNEA+ GRYVPRAVLMDLEPGTMDSVRSGP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQV H              ISK+REEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDICFRTL L+TP++GDLNHL+SA MSGVTC
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIAPTGTYKGDSDLQLERISVFYNEATGGRYVPRAVLMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQVTHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTC 238          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 406.757 bits (1044), Expect = 7.135e-113
Identity = 191/239 (79.92%), Postives = 211/239 (88.28%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y G++DLQLERINVYYNEA+ G+YVPRAVL+DLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDI FRTL L+TP++GDLNHL+SA MSG+TCC
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGESDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDISFRTLKLTTPTYGDLNHLVSAVMSGITCC 239          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB4_OOMCK (Tubulin beta-4 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB4 PE=3 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 9.318e-113
Identity = 194/237 (81.86%), Postives = 210/237 (88.61%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVT 781
            MREI+HIQGGQCG+QIG+KFWEV+  EHGIDPTG Y GD+DLQLER+NVYYNEA+ GRYVPRAVLMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQV H              ISKIREEYPDR+M+TFSV PSPKVSDTVVEPYNATLSVHQLVENADE MVLDNEALYDICFRTL L+TP++GDLNHL+   MSGVT
Sbjct:    1 MREIVHIQGGQCGDQIGAKFWEVISDEHGIDPTGTYNGDSDLQLERVNVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEQCDCLQGFQVTHSLGGGTGSGMGTLLISKIREEYPDRVMMTFSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRTLKLTTPTYGDLNHLVCVCMSGVT 237          
BLAST of CN185045 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 1.217e-112
Identity = 190/239 (79.50%), Postives = 210/239 (87.87%), Query Frame = 2
Query:   71 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLXLSTPSFGDLNHLISATMSGVTCC 787
            MRE++HIQGGQCGNQIG+KFWEV+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENADE M LDNEALYDICFRTL L+ P++GDLNHL+ A MSG+T C
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTNPTYGDLNHLVCAAMSGITTC 239          
The following BLAST results are available for this feature:
BLAST of CN185045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBB_STYLE1.300e-11481.59Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 ... [more]
TBB_EUPCR2.897e-11481.17Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB7_GOSHI2.897e-11481.59Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB_TOXGO4.941e-11480.33Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBB_EUPOC6.453e-11480.75Tubulin beta chain OS=Euplotes octocarinatus PE=3 ... [more]
TBB_TRYCR4.183e-11378.66Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2[more]
TBB_EIMTE5.463e-11381.09Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB1_PHYPO7.135e-11379.92Tubulin beta-1 chain OS=Physarum polycephalum GN=B... [more]
TBB4_OOMCK9.318e-11381.86Tubulin beta-4 chain OS=Oomycete-like sp. (strain ... [more]
TBB_PHYCI1.217e-11279.50Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185045 ID=CN185045; Name=CN185045; organism=Citrus sinensis; type=EST; length=787bp
GAGGAAAGGAAGAATCCCCTGAAAATATCCTCTGCAAATCTCGCTAATCA
AGAAACCCCAAAAGAAGAAAATGCGTGAAATCCTTCACATTCAAGGGGGC
CAATGCGGGAACCAAATCGGATCCAAGTTCTGGGAAGTGGTTTGCGCCGA
GCACGGCATAGACCCGACCGGAAAGTATCAAGGGGATACCGATTTGCAGC
TTGAGAGGATTAATGTGTATTACAACGAGGCAAGTTGCGGGAGATACGTG
CCTAGGGCCGTGCTCATGGATCTTGAACCTGGGACCATGGATAGCGTCAG
GTCTGGTCCGTACGGTCAGGTTTTTAGGCCCGACAATTTTGTCTTTGGCC
AGTCCGGCGCCGGAAACAACTGGGCGAAGGGGCATTATACTGAAGGAGCT
GAGCTGATTGATTCTGTGCTTGATGTTGTTCGTAAAGAAGCCGAGAACTG
CGATTGCTTGCAGGGATTTCAGGTGTGCCATTCTCTGGGAGGAGGGACGG
GTTCCGGGATGGGAACTTTGTTGATATCAAAGATAAGAGAGGAATACCCG
GATAGAATGATGCTTACTTTCTCAGTTTTCCCATCTCCTAAGGTCTCTGA
TACTGTTGTTGAGCCTTACAACGCTACTCTCTCTGTACATCAGCTAGTTG
AAAATGCAGATGAGTGTATGGTTCTTGATAATGAAGCCCTTTATGACATC
TGTTTCCGCACTCTCNAACTCAGCACTCCAAGCTTTGGTGATCTGAATCA
TTTGATATCTGCTACAATGTCTGGAGTTACCTGTTGT
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