CN185042

Overview
NameCN185042
Unique NameCN185042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2624 contig Csv1_Contig2624:327..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF1_LILLO (Profilin-1 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQALI GIY+E ++ GQCNM+VER+GDYL+DQGL
Sbjct:   75 IQGEPGAVIRGKKGSGGVTIKKTGQALIFGIYEEPMTPGQCNMVVERMGDYLVDQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF3_PHLPR (Profilin-3 OS=Phleum pratense GN=PRO3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.742e-11
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQAL+ GIYDE ++ GQCNM+VERLGDYL++QG+
Sbjct:   75 IQGEPGAVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF2_PHLPR (Profilin-2/4 OS=Phleum pratense GN=PRO2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.742e-11
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQAL+ GIYDE ++ GQCNM+VERLGDYL++QG+
Sbjct:   75 IQGEPGAVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_PRUDU (Profilin OS=Prunus dulcis PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GE GAVIR              QALI GIYDE L+ GQCNMIVERLGDYLI+QGL
Sbjct:   75 IQGEAGAVIRGKKGSGGITVKKTNQALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_PRUAV (Profilin OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GE GAVIR              QALI GIYDE L+ GQCNMIVERLGDYLI+QGL
Sbjct:   75 IQGEAGAVIRGKKGSGGITVKKTNQALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF2_MAIZE (Profilin-2 OS=Zea mays GN=PRO2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQAL+ GIYDE ++ GQCNM+VERLGDYL++QG+
Sbjct:   75 IQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLLEQGM 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF1_CITSI (Profilin OS=Citrus sinensis PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GE GAVIR              QALI GIYDE L+ GQCNMIVERLGDYLI+QGL
Sbjct:   75 IQGEAGAVIRGKKGSGGIIVKKTNQALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF2_SOYBN (Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = -3 
Query:  319 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQG 486
            I GEPGAVIR             G ALI GIYDE ++ GQCNM+VERLGDYLIDQG
Sbjct:   75 IQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERLGDYLIDQG 130
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_PYRCO (Profilin OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 35/57 (61.40%), Postives = 38/57 (66.67%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GE GAVIR              QAL+ GIY+E L+ GQCNMIVERLGDYLIDQGL
Sbjct:   75 IQGEGGAVIRGKKGSGGVTVKKTSQALVFGIYEEPLTPGQCNMIVERLGDYLIDQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_CYNDA (Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQAL+ GIYDE ++ GQCNM++E+LGDYLI+QG+
Sbjct:   75 IQGEPGAVIRGKKGSGGVTVKKTGQALVIGIYDEPMTPGQCNMVIEKLGDYLIEQGM 131
The following BLAST results are available for this feature:
BLAST of CN185042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PROF1_LILLO1.334e-1159.65Profilin-1 OS=Lilium longiflorum PE=2 SV=1[more]
PROF3_PHLPR1.742e-1157.89Profilin-3 OS=Phleum pratense GN=PRO3 PE=1 SV=1[more]
PROF2_PHLPR1.742e-1157.89Profilin-2/4 OS=Phleum pratense GN=PRO2 PE=1 SV=1[more]
PROF_PRUDU2.275e-1163.16Profilin OS=Prunus dulcis PE=1 SV=1[more]
PROF_PRUAV2.275e-1163.16Profilin OS=Prunus avium PE=1 SV=1[more]
PROF2_MAIZE2.275e-1157.89Profilin-2 OS=Zea mays GN=PRO2 PE=2 SV=2[more]
PROF1_CITSI2.275e-1163.16Profilin OS=Citrus sinensis PE=1 SV=2[more]
PROF2_SOYBN2.971e-1162.50Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1[more]
PROF_PYRCO3.880e-1161.40Profilin OS=Pyrus communis PE=1 SV=1[more]
PROF_CYNDA3.880e-1156.14Profilin OS=Cynodon dactylon GN=PRO1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185042 ID=CN185042; Name=CN185042; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTCAAAAAATAATTGTCACCATATCATATTATCAGAGTATCAACA
GTATCCAAAGATTCAAATTCTTCAAAACTGCAATACACATAAATTAAGGA
AACATGAAGGAGTTGGGGATGAAAAAAAAAAGATAAAAAAGGAACCCTAA
AGAACCAAAAGAGGCGGGAAAAAAAAATCACTCTTGTCCTCACACAGTTA
TTTTTGCAGCAAACAAATTTATACTGCCAGTTCAAGACCAAATATGGAAG
AAAAGGCAAAGCCCGAAAACCATAAAGCAATATATCGAAACCATTTGAAG
TTGACATGGGATCTACAGGCCCTGATCAATGAGATAATCCCCCAACCTCT
CAACGATCATGTTGCACTGCCCTGAAGACAATGCTTCATCGTATATACCA
GAAATCAGGGCTTGGCCCGATTTCTTGACGGAGACACCACCAGAACCCTT
TTTTCCACGAATCACAGCGCCAGGCTCACCCGGGATTA
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