CN185042

Overview
NameCN185042
Unique NameCN185042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2624 contig Csv1_Contig2624:327..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF3_MALDO (Profilin-3 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR              QAL+ GIYDE ++ GQCN++VERLGDYLI+QGL
Sbjct:   75 IQGEPGAVIRGKKGSGGITIKKTSQALLIGIYDEPVTPGQCNIVVERLGDYLIEQGL 131          
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF1_WHEAT (Profilin-1 (Fragment) OS=Triticum aestivum GN=PRO1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = -3
Query:  307 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL*IP 486
            I GEPG VIR             G ALI GIYDE ++ GQCN++VERLGDYLIDQG  +P
Sbjct:   75 IQGEPGVVIRGKKGTGGITIKKTGMALILGIYDEPMTPGQCNLVVERLGDYLIDQGYWVP 134          
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF1_MALDO (Profilin-1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GE GAVIR             GQAL+ GIY+E L+ GQCNMIVERLGDYLIDQGL
Sbjct:   75 IQGEGGAVIRGKKGSGGVTVKKTGQALVFGIYEEPLTPGQCNMIVERLGDYLIDQGL 131          
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_HELAN (Profilin OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = -3
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            + GEPGAVIR             GQA+I GIYDE ++ GQCNM+VERLGDYL++QG+
Sbjct:   77 LQGEPGAVIRGKKGAGGICIKKTGQAMIMGIYDEPVAPGQCNMVVERLGDYLLEQGM 133          
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_APIGR (Profilin OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEP AVIR             GQAL+ G+YDE ++ GQCN+IVERLGDYLIDQGL
Sbjct:   78 IQGEPNAVIRGKKGSGGVTIKKTGQALVFGVYDEPVTPGQCNVIVERLGDYLIDQGL 134          
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_PRUPE (Profilin OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = -3
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR               AL+ GIYDE ++ GQCNMIVERLGDYL++QGL
Sbjct:   75 IQGEPGAVIRGKKGPGGVTVKKSTLALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_FRAAN (Profilin OS=Fragaria ananassa PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = -3
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR               AL+ GIYDE ++ GQCNMIVERLGDYL++QGL
Sbjct:   75 IQGEPGAVIRGKKGPGGVTVKKTTLALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF3_AMBAR (Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            + GE GAVIR             GQAL+ GIYDE ++ GQCNM+VERLGDYLIDQG+
Sbjct:   77 LQGEQGAVIRGKKGAGGICIKKTGQALVMGIYDEPVAPGQCNMVVERLGDYLIDQGM 133          
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF1_PHLPR (Profilin-1 OS=Phleum pratense GN=PRO1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPG VIR             GQAL+ GIYDE ++ GQCNM+VERLGDYL++QG+
Sbjct:   75 IQGEPGRVIRGKKGAGGITIKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQGM 131          
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF_BETVE (Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GE GAVIR             GQAL+ GIY+E ++ GQCNM+VERLGDYLIDQGL
Sbjct:   77 IQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIDQGL 133          
The following BLAST results are available for this feature:
BLAST of CN185042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PROF3_MALDO3.880e-1157.89Profilin-3 OS=Malus domestica PE=1 SV=1[more]
PROF1_WHEAT3.880e-1156.67Profilin-1 (Fragment) OS=Triticum aestivum GN=PRO1... [more]
PROF1_MALDO3.880e-1163.16Profilin-1 OS=Malus domestica PE=1 SV=1[more]
PROF_HELAN5.068e-1156.14Profilin OS=Helianthus annuus PE=1 SV=1[more]
PROF_APIGR5.068e-1159.65Profilin OS=Apium graveolens PE=1 SV=1[more]
PROF_PRUPE6.619e-1157.89Profilin OS=Prunus persica PE=1 SV=1[more]
PROF_FRAAN6.619e-1157.89Profilin OS=Fragaria ananassa PE=1 SV=1[more]
PROF3_AMBAR6.619e-1157.89Profilin-3 OS=Ambrosia artemisiifolia GN=D03 PE=1 ... [more]
PROF1_PHLPR6.619e-1156.14Profilin-1 OS=Phleum pratense GN=PRO1 PE=1 SV=1[more]
PROF_BETVE8.645e-1159.65Profilin OS=Betula verrucosa GN=BETVII PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185042 ID=CN185042; Name=CN185042; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTCAAAAAATAATTGTCACCATATCATATTATCAGAGTATCAACA
GTATCCAAAGATTCAAATTCTTCAAAACTGCAATACACATAAATTAAGGA
AACATGAAGGAGTTGGGGATGAAAAAAAAAAGATAAAAAAGGAACCCTAA
AGAACCAAAAGAGGCGGGAAAAAAAAATCACTCTTGTCCTCACACAGTTA
TTTTTGCAGCAAACAAATTTATACTGCCAGTTCAAGACCAAATATGGAAG
AAAAGGCAAAGCCCGAAAACCATAAAGCAATATATCGAAACCATTTGAAG
TTGACATGGGATCTACAGGCCCTGATCAATGAGATAATCCCCCAACCTCT
CAACGATCATGTTGCACTGCCCTGAAGACAATGCTTCATCGTATATACCA
GAAATCAGGGCTTGGCCCGATTTCTTGACGGAGACACCACCAGAACCCTT
TTTTCCACGAATCACAGCGCCAGGCTCACCCGGGATTA
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