CN185042

Overview
NameCN185042
Unique NameCN185042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2624 contig Csv1_Contig2624:327..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF3_LILLO (Profilin-3 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 33/56 (58.93%), Postives = 36/56 (64.29%), Query Frame = -3 
Query:  319 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQG 486
            I GEPGAVIR               ALI GIYDE ++ GQCNM+VERLGDYL DQG
Sbjct:   75 IQGEPGAVIRGKKGSGGVTIKKTNMALIVGIYDEPMTPGQCNMVVERLGDYLYDQG 130
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF2_LILLO (Profilin-2 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 33/56 (58.93%), Postives = 36/56 (64.29%), Query Frame = -3 
Query:  319 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQG 486
            I GEPGAVIR               ALI GIYDE ++ GQCNM+VERLGDYL DQG
Sbjct:   75 IQGEPGAVIRGKKGSGGVTIKKTNMALIVGIYDEPMTPGQCNMVVERLGDYLYDQG 130
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF2_AMBAR (Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = -3 
Query:  319 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQG 486
            I GEPGAVIR               ALI GIYDE ++ GQCNMIVERLGDYL++QG
Sbjct:   75 IQGEPGAVIRGKKGPGGVTIKKTTMALIIGIYDEPMAPGQCNMIVERLGDYLLEQG 130
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF1_PHAVU (Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPG+VIR               AL+ GIYDE ++ GQCNMIVERLGDYLI+QGL
Sbjct:   75 IQGEPGSVIRGKKGPGGVTVKKTNLALVIGIYDEPMTPGQCNMIVERLGDYLIEQGL 131
[Close]
BLAST of CN185042 vs. ExPASy Swiss-Prot
Match: PROF1_MAIZE (Profilin-1 OS=Zea mays GN=PRO1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = -3 
Query:  316 IPGEPGAVIRXXXXXXXXXXXXXGQALISGIYDEALSSGQCNMIVERLGDYLIDQGL 486
            I GEPGAVIR             GQ+LI GIYDE ++ GQCN++VERLGDYL++QG+
Sbjct:   75 IQGEPGAVIRGKKGSGGITVKKTGQSLIIGIYDEPMTPGQCNLVVERLGDYLLEQGM 131
The following BLAST results are available for this feature:
BLAST of CN185042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PROF3_LILLO8.645e-1158.93Profilin-3 OS=Lilium longiflorum PE=2 SV=1[more]
PROF2_LILLO8.645e-1158.93Profilin-2 OS=Lilium longiflorum PE=2 SV=1[more]
PROF2_AMBAR8.645e-1158.93Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=... [more]
PROF1_PHAVU8.645e-1157.89Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1[more]
PROF1_MAIZE8.645e-1156.14Profilin-1 OS=Zea mays GN=PRO1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006K02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185042 ID=CN185042; Name=CN185042; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTCAAAAAATAATTGTCACCATATCATATTATCAGAGTATCAACA
GTATCCAAAGATTCAAATTCTTCAAAACTGCAATACACATAAATTAAGGA
AACATGAAGGAGTTGGGGATGAAAAAAAAAAGATAAAAAAGGAACCCTAA
AGAACCAAAAGAGGCGGGAAAAAAAAATCACTCTTGTCCTCACACAGTTA
TTTTTGCAGCAAACAAATTTATACTGCCAGTTCAAGACCAAATATGGAAG
AAAAGGCAAAGCCCGAAAACCATAAAGCAATATATCGAAACCATTTGAAG
TTGACATGGGATCTACAGGCCCTGATCAATGAGATAATCCCCCAACCTCT
CAACGATCATGTTGCACTGCCCTGAAGACAATGCTTCATCGTATATACCA
GAAATCAGGGCTTGGCCCGATTTCTTGACGGAGACACCACCAGAACCCTT
TTTTCCACGAATCACAGCGCCAGGCTCACCCGGGATTA
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