CN185037

Overview
NameCN185037
Unique NameCN185037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:29..499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.846e-21
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  130 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            +G W+ EED+ L   + +HG  +W  + K+    R GKSCRLRW N L   V+    + EE+++II+ HA  GN+W+ IA  L GRTDN IKN+WNS L R++
Sbjct:   14 RGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI 116          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.461e-20
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  130 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG--RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKV 435
            +GPW+ EED+ L   +  +G   W  I K + G  R GKSCRLRW N L P ++   F+  E+ +I+  HA  GN+W+ IA  L GRTDN IKN+WN+ LK+++
Sbjct:   14 RGPWTSEEDQKLVSHITNNGLSCWRAIPK-LAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRL 116          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYB1_NEUCR (Myb-like DNA-binding protein myb-1 OS=Neurospora crassa GN=rca-1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 7.252e-20
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  121 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 432
            D+ +GPWS  ED+ L +LV+  GP NW  +++ +  R+ K CR RW   L P + H   T EE  +I+R     G +WA IAR L GR+DNA+KN+WN    RK
Sbjct:    6 DQRRGPWSAGEDQRLIKLVKDLGPGNWVNVARILGTRTPKQCRERWHQNLKPGLNHGPMTQEEAAIIVREVDLKGPRWADIARKLQGRSDNAVKNYWNGLNNRK 109          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.701e-19
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  130 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 432
            KG W+ EED  L+Q + K+G   W      +P R+G     KSCRLRW N L P ++   F+ +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   10 KGAWTAEEDSLLRQCIGKYGEGKWH----QVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 4.701e-19
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  130 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 429
            K  W PEED  L+  V ++G R W+     +P R+G      SCR RW N L P ++   FT EE++ +++ HA  GNKW+ +AR   GRTDN IKN WN+   R
Sbjct:   18 KSKWKPEEDRILKDYVIQYGDRTWT----HVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNARRMR 118          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.047e-18
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  130 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 432
            KG W+ EED  L+Q + K+G   W      +P R+G     KSCRLRW N L P ++    + +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   10 KGAWTTEEDSLLRQCINKYGEGKWH----QVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.197e-18
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  130 KGPWSPEEDEALQQLVQKHGPRNWSLIS-KSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 432
            KG W+ EED  L+Q + K+G   W  +  ++   R  KSCRLRW N L P ++      +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   10 KGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.158e-17
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  130 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 432
            KG W+ EED  L+  + K+G   W      +P R+G     KSCRLRW N L P ++    + +E ++++R H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   10 KGAWTAEEDSLLRLCIDKYGEGKWH----QVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: MYBL_DICDI (Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.184e-16
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  130 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLK 426
            KG WSPEED+ L   V  +G  NW LI   + GR+   CR R+CN L PQ+    +TP+ED+ +     + G  KW+ +A+L+  RTDN     W    K
Sbjct:  652 KGRWSPEEDQCLINAVNAYGKGNWILIKNHVKGRTDVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLMENRTDNQCWRRWKQLNK 751          

HSP 2 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  127 IKGPWSPEEDEALQQLVQ--KHGPR-NWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTL 423
            +K  W+ EEDE L  +++   HG R +W  I++ IPGR+G  C  RW   L P ++   ++PEED+ +I A   +G   W  I   + GRTD   +  + + L
Sbjct:  596 MKREWTKEEDEVLAGVIKLHMHGERIDWQEITEYIPGRTGHQCLHRWHKTLDPSIKKGRWSPEEDQCLINAVNAYGKGNWILIKNHVKGRTDVQCRERYCNVL 698          
BLAST of CN185037 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.025e-15
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  139 WSPEEDEALQQLVQKHGPRNWSLISKSIP---GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 411
            W PEED  L+  V+++GPR W L+S+ +     R  KSC  RW N L P ++  + T EE  ++IR  A+ GNKW  IA  + GRT   +   W
Sbjct:    7 WRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100          
The following BLAST results are available for this feature:
BLAST of CN185037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYBP_MAIZE3.846e-2145.63Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB2_PHYPA1.461e-2045.19Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB1_NEUCR7.252e-2044.23Myb-like DNA-binding protein myb-1 OS=Neurospora c... [more]
MY114_ARATH4.701e-1941.51Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MY104_ARATH4.701e-1942.86Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB75_ARATH1.047e-1840.57Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MY113_ARATH5.197e-1840.20Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MYB90_ARATH1.158e-1739.62Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MYBL_DICDI2.184e-1640.00Myb-like protein L OS=Dictyostelium discoideum GN=... [more]
RS2_MAIZE7.025e-1540.43Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185037 ID=CN185037; Name=CN185037; organism=Citrus sinensis; type=EST; length=472bp
GAGGAAAGACCCACCTCTCTCGAAGCTAAAAACTGAAATTCTCTTGCATG
ATCAACACCCACTCATTGAAGTTAAATTATTTTTAATTGTTCATTAATGG
CGTTTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAGCCCCGAA
GAAGACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAAGAAATTG
GTCTCTAATCAGCAAATCAATCCCCGGAAGATCGGGAAAGTCTTGCCGGC
TACGGTGGTGCAACCAGCTTTCACCTCAAGTCGAGCACCGAGCGTTCACG
CCCGAAGAAGACGAGATGATCATACGCGCCCACGCTCGGTTTGGCAACAA
GTGGGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAACGCGATTA
AGAATCACTGGAACTCGACCTTAAAACGTAAGGTGTTCTTCGATGTTGAC
AGAGAACGGTATTTTTTTGAAT
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