CN185033

Overview
NameCN185033
Unique NameCN185033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_PORYE (Nitrogen regulatory protein P-II OS=Porphyra yezoensis GN=glnB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 52/105 (49.52%), Postives = 79/105 (75.24%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGE 521
            K+EAI+RP+++ +V  AL+  GI G+TV  V GFG Q G TER+ GSE+S D  + K+K+EI++S D+VE +++ I++ ++TGEIGDGKIF+  +  VIR+RT +
Sbjct:    3 KIEAIIRPFKLNEVKLALVKEGIGGMTVIKVSGFGRQKGQTERYKGSEYSID-IIDKIKIEIIISDDKVEKIVETIIKASKTGEIGDGKIFISSIERVIRIRTND 106          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: Y1344_METJA (Uncharacterized nitrogen regulatory PII-like protein MJ1344 OS=Methanocaldococcus jannaschii GN=MJ1344 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 57/107 (53.27%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 527
            KVEAI+RP +++ V  AL + G  G+TVS+V+G G QGG  ER+ G E+  D  + KVK+E+VV ++ V+ VID I E ARTG  GDGKIF++PV  V+RVRT E G
Sbjct:    3 KVEAIIRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVD-LIPKVKIELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEG 108          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_RHOSH (Nitrogen regulatory protein P-II OS=Rhodobacter sphaeroides GN=glnB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 51/110 (46.36%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            K+EAI++P+++ +V  AL   G++G++V++V+GFG Q G TE + G+ +  D F+ KVK+E+V++ D VE  ++ I+  +RT +IGDGKIF+ PV   IR+RTGE GE A
Sbjct:    3 KIEAIIKPFKLDEVKEALQAAGVQGLSVTEVKGFGRQKGHTELYRGAAYVVD-FLPKVKIEVVLADDMVEAAVEAIVSASRTDKIGDGKIFISPVEQAIRIRTGETGEDA 111          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_KLEOX (Nitrogen regulatory protein P-II OS=Klebsiella oxytoca GN=glnB PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 54/110 (49.09%), Postives = 81/110 (73.64%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            K++AI++P+++  V  AL  +GI G+TV++V+GFG Q G TE + G+E+  D F+ KVK+EIVV+ D V+  +D I+  A+TG+IGDGKIF+  V+ VIR+RTGE  + A
Sbjct:    3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIEIVVTDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_RHIME (Nitrogen regulatory protein P-II OS=Rhizobium meliloti GN=glnB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23
Identity = 51/107 (47.66%), Postives = 79/107 (73.83%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 527
            K+EAI++P+++ +V  AL  +G++G+TV++ +GFG Q G TE + G+E+  D F+ KVK+E+V++ +  E VI+ I   A+TG IGDGKIF+  V +VIR+RTGE G
Sbjct:    3 KIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKVEVVLADENAEAVIEAIRNAAQTGRIGDGKIFVSNVEEVIRIRTGETG 108          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_PORPU (Nitrogen regulatory protein P-II OS=Porphyra purpurea GN=glnB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            K+EAI+RP+++ +V  AL+  GI G+TV  V GFG Q G TER+ GSE+S D  + K+K+EI+VS D+V  + + I++ A+TGEIGDGKIF+  V  VIR+RT +    A
Sbjct:    3 KIEAIIRPFKLNEVKLALVKGGIGGMTVVKVSGFGRQKGQTERYKGSEYSID-IIDKIKIEIIVSDDKVNSITEIIIKTAKTGEIGDGKIFISDVEQVIRIRTNDLNSAA 111          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_SHIFL (Nitrogen regulatory protein P-II 1 OS=Shigella flexneri GN=glnB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.130e-23
Identity = 54/110 (49.09%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            K++AI++P+++  V  AL  +GI G+TV++V+GFG Q G TE + G+E+  D F+ KVK+EIVV  D V+  +D I+  A+TG+IGDGKIF+  V+ VIR+RTGE  + A
Sbjct:    3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_SALTY (Nitrogen regulatory protein P-II 1 OS=Salmonella typhimurium GN=glnB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.130e-23
Identity = 54/110 (49.09%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            K++AI++P+++  V  AL  +GI G+TV++V+GFG Q G TE + G+E+  D F+ KVK+EIVV  D V+  +D I+  A+TG+IGDGKIF+  V+ VIR+RTGE  + A
Sbjct:    3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_SALTI (Nitrogen regulatory protein P-II 1 OS=Salmonella typhi GN=glnB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.130e-23
Identity = 54/110 (49.09%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            K++AI++P+++  V  AL  +GI G+TV++V+GFG Q G TE + G+E+  D F+ KVK+EIVV  D V+  +D I+  A+TG+IGDGKIF+  V+ VIR+RTGE  + A
Sbjct:    3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_ECOLI (Nitrogen regulatory protein P-II 1 OS=Escherichia coli (strain K12) GN=glnB PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.130e-23
Identity = 54/110 (49.09%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            K++AI++P+++  V  AL  +GI G+TV++V+GFG Q G TE + G+E+  D F+ KVK+EIVV  D V+  +D I+  A+TG+IGDGKIF+  V+ VIR+RTGE  + A
Sbjct:    3 KIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111          
The following BLAST results are available for this feature:
BLAST of CN185033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GLNB_PORYE2.752e-2349.52Nitrogen regulatory protein P-II OS=Porphyra yezoe... [more]
Y1344_METJA3.594e-2353.27Uncharacterized nitrogen regulatory PII-like prote... [more]
GLNB_RHOSH3.594e-2346.36Nitrogen regulatory protein P-II OS=Rhodobacter sp... [more]
GLNB_KLEOX3.594e-2349.09Nitrogen regulatory protein P-II OS=Klebsiella oxy... [more]
GLNB_RHIME4.694e-2347.66Nitrogen regulatory protein P-II OS=Rhizobium meli... [more]
GLNB_PORPU4.694e-2350.00Nitrogen regulatory protein P-II OS=Porphyra purpu... [more]
GLNB_SHIFL6.130e-2349.09Nitrogen regulatory protein P-II 1 OS=Shigella fle... [more]
GLNB_SALTY6.130e-2349.09Nitrogen regulatory protein P-II 1 OS=Salmonella t... [more]
GLNB_SALTI6.130e-2349.09Nitrogen regulatory protein P-II 1 OS=Salmonella t... [more]
GLNB_ECOLI6.130e-2349.09Nitrogen regulatory protein P-II 1 OS=Escherichia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006J17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185033 ID=CN185033; Name=CN185033; organism=Citrus sinensis; type=EST; length=738bp
GAGGTGCAATTGCAAACCCAGCCTCGTTTACTCCGCTCAACTTCTCTTCT
CATCTCAAAGAACTTCCTCTTGTAAATTTCGGCTCCGTGCGGCCAAGTTT
GAGAATTTCTCGACTTTCTAGGCTCAAATGCACAAGAAATGTATCAAATC
TTCATGTTATCAGAGCCCAGAGCTCACCTGATTATATTCCTGATTCTAAG
TTTTACAAAGTGGAAGCCATTCTCAGGCCCTGGAGAGTCCAGCAGGTTTC
TTCGGCTTTGCTGAATATGGGTATCCGTGGTGTCACGGTTTCTGATGTTC
GAGGTTTTGGTGCTCAAGGTGGCTCAACAGAAAGGCATGGTGGCTCTGAA
TTTTCTGAGGATAAATTTGTTGCTAAAGTGAAGATGGAGATTGTGGTGAG
CAAAGACCAGGTGGAAGGAGTAATTGATAAAATTATGGAGGAGGCAAGGA
CTGGAGAAATTGGTGACGGCAAGATTTTTTTGGTACCTGTCTCAGATGTC
ATAAGAGTTCGAACTGGTGAACGAGGTGAAAAAGCTGAAAGGATGGCAGG
AGGATGGTCGGACATATCTTCAGCTGTGTGACCTTGTACTGATTTGTCGT
ATGATTTGAAAGCAAGATTAACATCAAAACCTCTTAGGTTTTAGAAGTTT
ATGTTGCAATTATTCTGTACCGCATGTGCTTGATAAAAAAACAAGAATAA
AAAACTGGCATTGGTCTTCCATCTACAAAAAAAAAAAA
back to top