CN185033

Overview
NameCN185033
Unique NameCN185033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNK_ECOL6 (Nitrogen regulatory protein P-II 2 OS=Escherichia coli O6 GN=glnK PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 49/109 (44.95%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  210 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            V  I++P++++ V  AL ++GI+G+TV++V+GFG Q G  E + G+E+S + F+ KVK+++ ++ DQ++ VID + + A TG+IGDGKIF+  +  VIR+RTGE  E A
Sbjct:    4 VTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNK_ECO57 (Nitrogen regulatory protein P-II 2 OS=Escherichia coli O157:H7 GN=glnK PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 49/109 (44.95%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  210 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            V  I++P++++ V  AL ++GI+G+TV++V+GFG Q G  E + G+E+S + F+ KVK+++ ++ DQ++ VID + + A TG+IGDGKIF+  +  VIR+RTGE  E A
Sbjct:    4 VTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_RHILV (Nitrogen regulatory protein P-II OS=Rhizobium leguminosarum bv. viciae GN=glnB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.393e-21
Identity = 50/107 (46.73%), Postives = 79/107 (73.83%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 527
            K+EAI++P+++ +V S    +G++G+TV++ +GFG Q G TE + G+E+  D F+ KVK+E+V++ +  E VI+ I + A+TG IGDGKIF+  V +VIR+RTGE G
Sbjct:    3 KIEAIIKPFKLDEVRSPS-GVGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKVEVVLADENAEAVIEAIRKAAQTGRIGDGKIFVSNVEEVIRIRTGETG 107          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB1_METTH (Nitrogen regulatory protein P-II 1 OS=Methanobacterium thermoautotrophicum GN=MTH_662 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.738e-21
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            K+ AI+R  +++ V  AL  MGI G+TVSDV+G G Q G  E + G ++  D  + KV++EIVV  + +E  ++ I E ARTG++GDGKIF+  V DV+R+RTGE G  A
Sbjct:    6 KITAIIRREKLEDVKDALELMGIHGMTVSDVKGRGQQMGIRESYRGMDYCVD-LLPKVQLEIVVDSEDLERTVEAISENARTGDVGDGKIFVTDVIDVVRIRTGEHGRDA 114          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB2_METTH (Nitrogen regulatory protein P-II 2 OS=Methanobacterium thermoautotrophicum GN=MTH_664 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20
Identity = 50/110 (45.45%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            ++ AI+RP ++++V +AL   G  G+TV++VRG G Q G TE + G ++  D  + K K+EIVV+ + V+ V++ I++ A+TG+IGDGKIF+  V +V+R+RTGE G+KA
Sbjct:    6 EIVAIIRPEKLEEVKNALEAAGCHGMTVTEVRGRGRQLGITESYRGRDYRID-LLPKTKIEIVVNDEDVDTVVETIVKSAQTGDIGDGKIFISGVDEVVRIRTGESGKKA 114          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_CYACA (Nitrogen regulatory protein P-II OS=Cyanidium caldarium GN=glnB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20
Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  201 FYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGER 524
            F K+EAI+RP+++++V   L+  G+ G+TV++V G G Q G  ER  G E+ + + + KVK+EIVV  + ++ +I+ I+    TGEIGDGKIF+ PVS VIR+RT ++
Sbjct:    2 FSKLEAIIRPFKLEEVKVRLMTFGVPGITVTNVMGCGKQIGGIERSKGVEY-DSELIEKVKIEIVVMNEHIDELIEIIINAVWTGEIGDGKIFVSPVSSVIRIRTQDK 108          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB_RHIET (Nitrogen regulatory protein P-II OS=Rhizobium etli GN=glnB PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18
Identity = 44/109 (40.37%), Postives = 76/109 (69.72%), Query Frame = 3
Query:  210 VEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            V AI++P+++ +V  AL  +GI+G+TV++V+G+G Q G TE + G+ ++   F+ K+K+EI V+ + V+  ++ I   A+TG+IGDGKIF+  +   +R+RTGE   +A
Sbjct:    4 VMAIIKPFKLDEVREALTAIGIQGLTVTEVKGYGRQKGHTEIYRGTVYAVS-FLPKLKIEIAVASELVDRAVEAIGASAKTGQIGDGKIFVYSIDHAVRIRTGETDSEA 111          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: NRGB_BACSU (Nitrogen regulatory PII-like protein OS=Bacillus subtilis GN=nrgB PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 3
Query:  198 KFYKVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            + +KVE + RP   +++   L  +G+  +T S+V G G Q   TE + G +  E     ++K+EIVVSK  V+ V +      +TG  GDGKIF+  +S+ I +RTGE G +A
Sbjct:    4 QMFKVEIVTRPANFEKLKQELGKIGVTSLTFSNVHGCGLQKAHTELYRGVKI-ESNVYERLKIEIVVSKVPVDQVTETAKRVLKTGSPGDGKIFVYEISNTINIRTGEEGPEA 115          
BLAST of CN185033 vs. ExPASy Swiss-Prot
Match: GLNB2_METMP (Nitrogen fixation nifHD region glnB-like protein 2 OS=Methanococcus maripaludis GN=glnBII PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  207 KVEAILRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSED--------KFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 536
            ++ AI+RP ++ Q  + L  +G   +T + V G G Q       G    +++        +++ K  + ++V  +    V++ IM+  ++G+ GDGKIF+ P+ D+I VRT ERGE A
Sbjct:    3 EIIAIIRPSKMAQTKTVLEGLGFPAMTANRVLGRGKQKAIVGELGFEVDNKELLNQPGDMRYIPKTMLTLIVPDEDASLVVEAIMKVNKSGQYGDGKIFVCPIEDIITVRTSERGEAA 120          
The following BLAST results are available for this feature:
BLAST of CN185033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
GLNK_ECOL64.393e-2144.95Nitrogen regulatory protein P-II 2 OS=Escherichia ... [more]
GLNK_ECO574.393e-2144.95Nitrogen regulatory protein P-II 2 OS=Escherichia ... [more]
GLNB_RHILV4.393e-2146.73Nitrogen regulatory protein P-II OS=Rhizobium legu... [more]
GLNB1_METTH5.738e-2147.27Nitrogen regulatory protein P-II 1 OS=Methanobacte... [more]
GLNB2_METTH1.278e-2045.45Nitrogen regulatory protein P-II 2 OS=Methanobacte... [more]
GLNB_CYACA2.848e-2045.37Nitrogen regulatory protein P-II OS=Cyanidium cald... [more]
GLNB_RHIET2.665e-1840.37Nitrogen regulatory protein P-II OS=Rhizobium etli... [more]
NRGB_BACSU8.873e-1437.17Nitrogen regulatory PII-like protein OS=Bacillus s... [more]
GLNB2_METMP9.182e-1130.51Nitrogen fixation nifHD region glnB-like protein 2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185033 ID=CN185033; Name=CN185033; organism=Citrus sinensis; type=EST; length=738bp
GAGGTGCAATTGCAAACCCAGCCTCGTTTACTCCGCTCAACTTCTCTTCT
CATCTCAAAGAACTTCCTCTTGTAAATTTCGGCTCCGTGCGGCCAAGTTT
GAGAATTTCTCGACTTTCTAGGCTCAAATGCACAAGAAATGTATCAAATC
TTCATGTTATCAGAGCCCAGAGCTCACCTGATTATATTCCTGATTCTAAG
TTTTACAAAGTGGAAGCCATTCTCAGGCCCTGGAGAGTCCAGCAGGTTTC
TTCGGCTTTGCTGAATATGGGTATCCGTGGTGTCACGGTTTCTGATGTTC
GAGGTTTTGGTGCTCAAGGTGGCTCAACAGAAAGGCATGGTGGCTCTGAA
TTTTCTGAGGATAAATTTGTTGCTAAAGTGAAGATGGAGATTGTGGTGAG
CAAAGACCAGGTGGAAGGAGTAATTGATAAAATTATGGAGGAGGCAAGGA
CTGGAGAAATTGGTGACGGCAAGATTTTTTTGGTACCTGTCTCAGATGTC
ATAAGAGTTCGAACTGGTGAACGAGGTGAAAAAGCTGAAAGGATGGCAGG
AGGATGGTCGGACATATCTTCAGCTGTGTGACCTTGTACTGATTTGTCGT
ATGATTTGAAAGCAAGATTAACATCAAAACCTCTTAGGTTTTAGAAGTTT
ATGTTGCAATTATTCTGTACCGCATGTGCTTGATAAAAAAACAAGAATAA
AAAACTGGCATTGGTCTTCCATCTACAAAAAAAAAAAA
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