CN185024

Overview
NameCN185024
Unique NameCN185024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9154 contig Csv1_Contig9154:350..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.393e-43
Identity = 86/188 (45.74%), Postives = 126/188 (67.02%), Query Frame = 3
Query:    6 ICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLD 569
            +CE   LP+VA+YW+ VI IN++Q+ RF ++++A +FNTV++KKIA+ GFAFKK+TGDTRE+ AI V K L+ + A+LS+YDP+V + Q+  DL       D             + ++V  D Y A + AH + +LTEWDEF  L+Y +I+++MQ PA +FDGR ++D   LREIGF  ++IG   D
Sbjct:  294 LCESLNLPQVADYWQGVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQD-----------VERLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470          
BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: UDG_RHIME (UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti GN=rkpK PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17
Identity = 53/169 (31.36%), Postives = 86/169 (50.89%), Query Frame = 3
Query:   57 IKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 563
            + +ND +K     +V+A+    +   KIAVLG  FK +T D R++PAI V + L    AR++ YDP+  E+                      +   ++ +    D YEA  +A  + I+TEW+EF+ LD+ R+   M+ P  V D RN+   +++ + GF   SIG+P
Sbjct:  291 VAVNDNRKRAMGRKVIAAAGGDIRGSKIAVLGLTFKPNTDDMRDSPAIAVVQALQDAGARVTGYDPEGMEN----------------------ARKLIEGLDCARDPYEAAAEADALVIITEWNEFRALDFDRLKSTMKTPLLV-DLRNIYRKDEVAKHGFRYASIGRP 436          
BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: UDG_RICFE (UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN=udg PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.509e-17
Identity = 57/174 (32.76%), Postives = 86/174 (49.43%), Query Frame = 3
Query:   48 KQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLD 569
            K VIK N  + S  V+++   +   +  K IAVLG  +K  T D R +PAI++ K LL     +  +DP   E+         K + +H            K +  +    EA K    + I TEW EFK L++Q IYD ++ P  V D RN++D   +++IGF  Y++G  LD
Sbjct:  283 KAVIKSNKQRPSNMVDKIATLLDGDLKGKNIAVLGLTYKAGTDDVRASPAIEIVKILLNKDVYVKAFDPIGLENA--------KKNLEH------------KNLLYLDSVAEACKSVDIIVIATEWLEFKELNWQGIYDLVKFP-IVIDLRNIIDNEAMKKIGFRYYAVGSKLD 435          
BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: UDG_RICCN (UDP-glucose 6-dehydrogenase OS=Rickettsia conorii GN=udg PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.476e-16
Identity = 53/173 (30.64%), Postives = 85/173 (49.13%), Query Frame = 3
Query:   48 KQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPL 566
            K VIK N  + S  V+++   +   +  K IA+LG  +K  T D R +PAI + K LL     +  +DP   E+         K + +H            K +  +  A +A K    + I TEW EFK L++Q IYD ++ P  + D RN++D   +++IGF  Y++G  +
Sbjct:  281 KAVIKSNKQRPSNMVDKIATLLDGDLKGKNIAILGLTYKAGTDDVRASPAIAIVKILLNKDVYVKAFDPIGLENA--------KKNLEH------------KNLLYLDSAVDACKSVDIIVIATEWSEFKELNWQEIYDLVKSP-IIIDFRNILDNETMKKIGFRYYAVGSKI 432          
BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: UDG_RICPR (UDP-glucose 6-dehydrogenase OS=Rickettsia prowazekii GN=udg PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.575e-15
Identity = 52/173 (30.06%), Postives = 82/173 (47.40%), Query Frame = 3
Query:   48 KQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPL 566
            K VIK N  + S  V ++   +   +  + IA+LG  +K  T D R +PAI++   LL     +  +DP   E+         K + +H            K +     A EA K    + I TEW EFK L++Q IY N+ K   + D RN++D   +++IGF  Y++G  +
Sbjct:  283 KSVIKSNKLRPSNMVAKIATLLDGDLKGRNIAILGLTYKAGTDDVRASPAIEIITILLNKDVYVKAFDPIGLENA--------KKNLEH------------KNLLYFASAVEACKSVDIIVIATEWSEFKELNWQEIY-NLVKSPMIIDLRNILDNEVMKKIGFRYYAVGSQI 434          
BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: UDG_RICBR (UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=udg PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.575e-15
Identity = 49/171 (28.65%), Postives = 84/171 (49.12%), Query Frame = 3
Query:   54 VIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPL 566
            VI+ N  + S  V+++   +   +  K IAVLG  +K  T D R +PAI++ K LL     +  +DP   E+      +   F  ++ L+L                A +    +  + I TEW EF+ LD+Q+IY  ++ P  + D RN++ A+++  IGF  Y++G  +
Sbjct:  285 VIRSNKERPSLMVDKIATLLDEDLKGKNIAVLGLTYKAGTDDVRASPAIEIIKNLLDKGTYVKAFDPMGLEN------SQKTFQNENLLYLD--------------SAIKVCDSSDAIIITTEWSEFQALDWQKIYSLVKTP-IIIDLRNILKADEVESIGFRYYTVGSKI 434          
BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: UDG_RICTY (UDP-glucose 6-dehydrogenase OS=Rickettsia typhi GN=udg PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 3
Query:   48 KQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPL 566
            K VIK N  +    V ++   +   +  + IA+LG  +K  T D R +PAI++   LL     +  +DP   E+         K + +H            K +     A EA +    + I TEW EFK L++Q IYD ++ P  + D RN++D   +++IGF  Y++G  +
Sbjct:  283 KSVIKSNKLRPGNMVAKIATLLDGDLKGRNIAILGLTYKAGTDDVRASPAIEIITILLNKDVYVKAFDPIGLENA--------KKNLEH------------KNLLYFASAVEACESVDIIVIATEWSEFKELNWQEIYDLVKSP-MIIDLRNILDNEVMKKIGFRYYAVGSKI 434          
BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: TUAD_BACSU (UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subtilis GN=tuaD PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 49/170 (28.82%), Postives = 83/170 (48.82%), Query Frame = 3
Query:   54 VIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 563
            VI+ N+ Q+   V++++  M  +V  + I+VLG AFK +T D R  PA+D+   L    A +  YD                     P+ +   S    +QV    D Y A +D     ILT+W E K ++  ++   +++P  + DGRN+    +++  G+I +SIG+P
Sbjct:  286 VIETNEKQRVHIVDKLLTVM-GSVKGRTISVLGLAFKPNTNDVRSAPALDIIPMLQQLGAHVKAYD---------------------PIAIPEASAILGEQVEYYTDVYAAMEDTDACLILTDWPEVKEMELVKVKTLLKQPV-IIDGRNLFSLEEMQAAGYIYHSIGRP 432          
BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: YWQF_BACSU (UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subtilis GN=ywqF PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 52/174 (29.89%), Postives = 80/174 (45.98%), Query Frame = 3
Query:   39 EYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 560
            E  K VIK+N+ Q++  V++ + +    V+ K IA+LG +FK +T D RE P+I +   L    AR+  YDP                   H  H+ P +    + +       EA K +  V ILT+W + K        D M+ P  +FDGRN    ++    G   YS+G+
Sbjct:  280 ELLKSVIKVNNNQQAMLVDKAL-NRLGGVTGKTIALLGLSFKPNTDDMREAPSIVIADRLAALDARIRAYDPIAV---------------SHAKHVLPQAVEYKETIE------EAVKGSDAVMILTDWADIKQFPLAAYQDLMETP-LIFDGRNCYTLDEALAAGVEYYSVGR 430          
BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: Y1054_METJA (Uncharacterized protein MJ1054 OS=Methanocaldococcus jannaschii GN=MJ1054 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 3
Query:   63 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 560
            +N+ Q   F  ++  + +  ++ K  AVLG AFK +T D RE+ AI +   LL   A +  +D    E   +  + M K D     +           + V+ D YE  K+  G+ I  E+D F   D+++I  N+ K   VFDGRN++D  K++++GF  Y +G+
Sbjct:  743 VNEEQIKWFFEKI-KNYYGNLNGKTFAVLGLAFKPNTDDLRESRAIKLIDMLLESGAIVKGFD--YVEKARENTINMYKLDKSKGFYGY--------NLYVLDDLYETVKNVDGIIITVEYD-FNKEDWEKI-GNLVKEKVVFDGRNILDVEKIKKLGFKYYGVGR 895          
The following BLAST results are available for this feature:
BLAST of CN185024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
UGDH_CAEEL1.393e-4345.74UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]
UDG_RHIME3.819e-1731.36UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti ... [more]
UDG_RICFE8.509e-1732.76UDP-glucose 6-dehydrogenase OS=Rickettsia felis GN... [more]
UDG_RICCN2.476e-1630.64UDP-glucose 6-dehydrogenase OS=Rickettsia conorii ... [more]
UDG_RICPR3.575e-1530.06UDP-glucose 6-dehydrogenase OS=Rickettsia prowazek... [more]
UDG_RICBR3.575e-1528.65UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (... [more]
UDG_RICTY1.358e-1428.90UDP-glucose 6-dehydrogenase OS=Rickettsia typhi GN... [more]
TUAD_BACSU1.358e-1428.82UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subti... [more]
YWQF_BACSU2.562e-1329.89UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subti... [more]
Y1054_METJA5.707e-1330.72Uncharacterized protein MJ1054 OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185024 ID=CN185024; Name=CN185024; organism=Citrus sinensis; type=EST; length=736bp
GAGGCATCTGCGAGTGCAATGGCCTTCCAGAGGTGGCTGAGTACTGGAAA
CAAGTCATTAAGATCAATGATTACCAGAAAAGCCGTTTTGTGAACCGCGT
AGTTGCCTCTATGTTCAACACGGTTTCAAACAAGAAGATTGCCGTTCTGG
GATTTGCCTTCAAGAAGGATACAGGTGACACCAGAGAGACCCCAGCCATT
GATGTCTGCAAGGGGCTTTTGGGAGACAAAGCTCGGTTGAGTATATACGA
CCCACAGGTCACCGAGGACCAGATCCAGAGGGACCTTACAATGAACAAGT
TTGACTGGGACCATCCTCTTCACCTCCAGCCAATGAGTCCCACCACGGTG
AAGCAAGTGAGCGTGGTCTGGGATGCCTATGAAGCAACAAAAGATGCCCA
TGGTGTCTGCATCTTGACCGAGTGGGATGAGTTCAAGACTCTTGACTATC
AGAGGATATATGACAACATGCAGAAACCAGCATTCGTGTTTGATGGCAGG
AATGTTGTTGATGCCAACAAGTTGAGGGAGATTGGTTTCATCGTGTACTC
CATTGGTAAGCCACTCGATCCATGGTTGAAGGACATGCCGGCTGTTGCAT
AAAAAGAGACGCCAATGGGCATGCTCGTGTCATCGGGCATCAGATTATAG
ATGATGAAGAAGTCAGCTCAATTCTTTACTATATTTTGATGAGTTTTTTG
TTGTGCCTTTGCTTTTGCTAAGAGGCTCTATGTTTT
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