CN185024

Overview
NameCN185024
Unique NameCN185024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185024 vs. ExPASy Swiss-Prot
Match: YTCA_BACSU (Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacillus subtilis GN=ytcA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 49/172 (28.49%), Postives = 80/172 (46.51%), Query Frame = 3 
Query:   48 KQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKP 563
            + V  IND Q   ++ ++  S F T+  KK AVLG +FK +T D R + A+ + + L      +  YDP+                   P HL+       + V+    A++A +++  + + TEW EF   D+++  D M K   V DGRNV+    +   G I   +G+P
Sbjct:  282 RAVQHINDTQLGLYIKKI-QSFFETLQGKKAAVLGISFKPNTDDIRNSQAVRLMERLAELGCDVHAYDPEAV----------------LPEHLR-------QHVTQHSQAFDAIEESDFLFLATEWSEFLAFDWKKAADIM-KGRLVIDGRNVLKKELIEACGLICTGVGRP 428
The following BLAST results are available for this feature:
BLAST of CN185024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
YTCA_BACSU1.836e-1128.49Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185024 ID=CN185024; Name=CN185024; organism=Citrus sinensis; type=EST; length=736bp
GAGGCATCTGCGAGTGCAATGGCCTTCCAGAGGTGGCTGAGTACTGGAAA
CAAGTCATTAAGATCAATGATTACCAGAAAAGCCGTTTTGTGAACCGCGT
AGTTGCCTCTATGTTCAACACGGTTTCAAACAAGAAGATTGCCGTTCTGG
GATTTGCCTTCAAGAAGGATACAGGTGACACCAGAGAGACCCCAGCCATT
GATGTCTGCAAGGGGCTTTTGGGAGACAAAGCTCGGTTGAGTATATACGA
CCCACAGGTCACCGAGGACCAGATCCAGAGGGACCTTACAATGAACAAGT
TTGACTGGGACCATCCTCTTCACCTCCAGCCAATGAGTCCCACCACGGTG
AAGCAAGTGAGCGTGGTCTGGGATGCCTATGAAGCAACAAAAGATGCCCA
TGGTGTCTGCATCTTGACCGAGTGGGATGAGTTCAAGACTCTTGACTATC
AGAGGATATATGACAACATGCAGAAACCAGCATTCGTGTTTGATGGCAGG
AATGTTGTTGATGCCAACAAGTTGAGGGAGATTGGTTTCATCGTGTACTC
CATTGGTAAGCCACTCGATCCATGGTTGAAGGACATGCCGGCTGTTGCAT
AAAAAGAGACGCCAATGGGCATGCTCGTGTCATCGGGCATCAGATTATAG
ATGATGAAGAAGTCAGCTCAATTCTTTACTATATTTTGATGAGTTTTTTG
TTGTGCCTTTGCTTTTGCTAAGAGGCTCTATGTTTT
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