CN185012

Overview
NameCN185012
Unique NameCN185012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.435e-25
Identity = 49/58 (84.48%), Postives = 56/58 (96.55%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAA+I+N+ HAW DHWIFWVGPFIGAALAA+YHQ++IRAIPFKSR+
Sbjct:  230 ITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFKSRS 287          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.252e-25
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = -2
Query:  206 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSR 376
            ITGTGINPARSLGAAI++N+ HAW+DHWIFWVGPFIGAALAA+YH ++IRA+PFKSR
Sbjct:  231 ITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFKSR 287          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.208e-24
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = -2
Query:  206 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSR 376
            ITGTGINPARSLGAAI++N+ HAW DHWIFWVGPFIGAALAA+YH +VIRAIPFKSR
Sbjct:  231 ITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFKSR 287          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.516e-24
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = -2
Query:  206 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSR 376
            ITGTGINPARSLGAAI+FNK   W+DHWIFWVGPFIGAALAA+YHQ+VIRAIPFKS+
Sbjct:  233 ITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 289          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.976e-23
Identity = 46/54 (85.19%), Postives = 52/54 (96.30%), Query Frame = -2
Query:  215 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPF 376
            ITGTGINPARSLGAAII+N +HAW+DHWIFWVGP IGAALAA+YHQI+IRA+PF
Sbjct:  230 ITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRAMPF 283          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.131e-22
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLGAAII++  H W  HWIFWVGPF GAALAAVYHQ+V+RAIPFKS A
Sbjct:  237 ITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRAIPFKSSA 294          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.752e-21
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = -2
Query:  224 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 376
            ITGTGINPARSLGAA+I+N D AWDDHWIFWVGPFIGAA+AA YHQ V+RA
Sbjct:  222 ITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRA 272          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            ITGTGINPARSLGAAII+NKD AWD HWIFWVGPF GAA+AA YHQ V+RA   K+
Sbjct:  221 ITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKA 276          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.080e-20
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            ITGTGINPARS GAA+I+NK   WDDHWIFWVGPFIGAA+AA YHQ V+RA   KS
Sbjct:  220 ITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKS 275          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.080e-20
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            ITGTGINPARS GAA+I+NK   WDDHWIFWVGPFIGAA+AA YHQ V+RA   KS
Sbjct:  222 ITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKS 277          
The following BLAST results are available for this feature:
BLAST of CN185012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP11_MAIZE2.435e-2584.48Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP15_MAIZE9.252e-2582.46Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP13_ORYSJ1.208e-2485.96Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP2_PEA3.516e-2485.96Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP1_SOLLC2.976e-2385.19Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP16_MAIZE1.131e-2281.03Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP25_MAIZE4.752e-2184.31Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP25_ARATH1.806e-2078.57Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH3.080e-2076.79Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ARATH3.080e-2076.79Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185012 ID=CN185012; Name=CN185012; organism=Citrus sinensis; type=EST; length=377bp
AAGATATAACAGAATAATAGTAAAGACTAAAAAAAGAATCCTCCAATCAA
AAGCTTAAAAAAAAAATACAGCAAAGCTAGATAATTTACACACACAATTA
ATTAACATCTTAAACAGTTAAACACCAAATGCACATAAACAAAAAGACAC
GACAAAGAAGATACAAATTAAAAAAAAAAAGGTCCATCAGCGAACTCTCT
TAAGCCCTGGACTTGAAGGGAATGGCCCTGATGACTATCTGGTGGTACAC
AGCAGCCAGTGCAGCTCCAATGAATGGCCCAACCCAGAAGATCCAATGGT
CATCCCAGGCATGGTCTTTGTTGAAGATGATGGCAGCTCCAAGACTCCTA
GCTGGGTTGATGCCAGTTCCTGTGATG
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