CN185012

Overview
NameCN185012
Unique NameCN185012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.023e-20
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            ITGTGINPARS GAA+IFNK   WDDHWIFWVGPFIGA +AA YHQ V+RA   KS
Sbjct:  220 ITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKS 275          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.254e-20
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = -2
Query:  224 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 376
            ITGTGINPARSLGAA+I+NKD AWDD WIFWVGP IGAA+AA YHQ V+RA
Sbjct:  226 ITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 276          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.254e-20
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = -2
Query:  224 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 376
            ITGTGINPARSLGAA+I+NKD AWDD WIFWVGP IGAA+AA YHQ V+RA
Sbjct:  227 ITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 277          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.254e-20
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            +TGTGINPARSLGAA+I+NKD  WDDHWIFWVGP +GAA+AA YHQ ++RA   K+
Sbjct:  227 VTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKA 282          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            +TGTGINPARSLGAA+++NKD  WDDHWIFWVGP +GAA+AA YHQ ++RA   K+
Sbjct:  229 VTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKA 284          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.170e-19
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARS GAA+I+N + AWDDHWIFWVGPF+GA  AA YHQ ++RA   K+ A
Sbjct:  213 ITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALA 270          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = -2
Query:  224 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 376
            ITGTGINPARSLG A+I+NKD AWDD WIFWVGP IGAA+AA YHQ V+RA
Sbjct:  226 ITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 276          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.996e-19
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            ITGTGINPARS GAA+I+NK   WDDHWIFWVGPF+GA  AA YHQ V+RA   K+
Sbjct:  217 ITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKA 272          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.607e-19
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = -2
Query:  224 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 376
            ITGTGINPARSLGAA+++N   AW D WIFWVGPFIGAA+AA+YHQIV+RA
Sbjct:  226 ITGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRA 276          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.405e-19
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = -2
Query:  224 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 376
            +TGTGINPARSLGAA+++N   AW D WIFWVGPFIGAA+AA+YHQIV+RA
Sbjct:  221 VTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRA 271          
The following BLAST results are available for this feature:
BLAST of CN185012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP23_ARATH4.023e-2076.79Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP24_MAIZE5.254e-2082.35Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE5.254e-2082.35Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP21_MAIZE5.254e-2071.43Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_MAIZE8.962e-2069.64Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP28_ARATH1.170e-1968.97Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP22_ORYSJ1.529e-1980.39Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP1_ATRCA1.996e-1971.43Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_MAIZE2.607e-1978.43Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ORYSJ3.405e-1976.47Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185012 ID=CN185012; Name=CN185012; organism=Citrus sinensis; type=EST; length=377bp
AAGATATAACAGAATAATAGTAAAGACTAAAAAAAGAATCCTCCAATCAA
AAGCTTAAAAAAAAAATACAGCAAAGCTAGATAATTTACACACACAATTA
ATTAACATCTTAAACAGTTAAACACCAAATGCACATAAACAAAAAGACAC
GACAAAGAAGATACAAATTAAAAAAAAAAAGGTCCATCAGCGAACTCTCT
TAAGCCCTGGACTTGAAGGGAATGGCCCTGATGACTATCTGGTGGTACAC
AGCAGCCAGTGCAGCTCCAATGAATGGCCCAACCCAGAAGATCCAATGGT
CATCCCAGGCATGGTCTTTGTTGAAGATGATGGCAGCTCCAAGACTCCTA
GCTGGGTTGATGCCAGTTCCTGTGATG
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