CN185012

Overview
NameCN185012
Unique NameCN185012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.448e-19
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            ITGTGINPARS+GAA+I+N+  AWDDHWIFW GPFIGA  AA YHQ ++RA   K+
Sbjct:  217 ITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKA 272          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.448e-19
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            ITGTGINPARS+GAA+IFN + AW +HWIFWVGPF+GAA+AA YHQ ++RA   K+
Sbjct:  227 ITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKA 282          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.809e-19
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            ITGTGINPARS GAA+I+N   AWDD WIFWVGPF+GAA+AA YHQ V+RA   K+
Sbjct:  221 ITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKA 276          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.587e-19
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            +TGTGINPARS G A+IFN D AWDD WI+WVGPF+GAA+AA+YHQ ++R    K+
Sbjct:  224 VTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKA 279          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.587e-19
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = -2
Query:  224 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 376
            ITGTGINPARSLGAA+I+N+  AW DHWIFWVGP IGAA+AA YHQ V+RA
Sbjct:  227 ITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRA 277          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.908e-19
Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = -2
Query:  224 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRA 376
            ITGTGINPARSLG A+++N + AW D WIFWVGPFIGAA+AA+YHQ+++RA
Sbjct:  224 ITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRA 274          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.690e-18
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            ITGTGINPARS GAA+I+N + AWDD WIFWVGP IGAA AA YHQ ++RA   K+
Sbjct:  222 ITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKA 277          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = -2
Query:  209 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKS 376
            ITGTGINPARS GAA+I+N + AWDD WIFWVGPF+GA  AA YHQ ++RA   K+
Sbjct:  215 ITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKA 270          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.440e-17
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = -2
Query:  227 ITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVIR 376
            ITGTGINPARSLGAA+++N+  AW DHWIFWVGP IGA LAA YH++V+R
Sbjct:  224 ITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLR 273          
BLAST of CN185012 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.266e-12
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = -2
Query:  203 ITGTGINPARSLGAAIIFN--KDHAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 376
            ITGTGINPARSLG A++       AW   WIFWVGPF GAA A +YH  ++R    K+ A
Sbjct:  212 ITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKAFA 271          
The following BLAST results are available for this feature:
BLAST of CN185012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP26_ORYSJ4.448e-1969.64Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP21_ORYSJ4.448e-1969.64Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP26_ARATH5.809e-1971.43Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP27_MAIZE7.587e-1966.07Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP23_ORYSJ7.587e-1978.43Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP24_ORYSJ9.908e-1972.55Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP24_ARATH1.690e-1869.64Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP27_ARATH2.883e-1867.86Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP27_ORYSJ2.440e-1774.00Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP28_ORYSJ5.266e-1255.00Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006J01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185012 ID=CN185012; Name=CN185012; organism=Citrus sinensis; type=EST; length=377bp
AAGATATAACAGAATAATAGTAAAGACTAAAAAAAGAATCCTCCAATCAA
AAGCTTAAAAAAAAAATACAGCAAAGCTAGATAATTTACACACACAATTA
ATTAACATCTTAAACAGTTAAACACCAAATGCACATAAACAAAAAGACAC
GACAAAGAAGATACAAATTAAAAAAAAAAAGGTCCATCAGCGAACTCTCT
TAAGCCCTGGACTTGAAGGGAATGGCCCTGATGACTATCTGGTGGTACAC
AGCAGCCAGTGCAGCTCCAATGAATGGCCCAACCCAGAAGATCCAATGGT
CATCCCAGGCATGGTCTTTGTTGAAGATGATGGCAGCTCCAAGACTCCTA
GCTGGGTTGATGCCAGTTCCTGTGATG
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