CN185010

Overview
NameCN185010
Unique NameCN185010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG   +  V++RIGF+  +C  FGI  GDNLDC +QRP+G +L   S+
Sbjct:  260 TNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG   ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  272 TNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  186 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 329
            TNIINGGIECG   N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:  203 TNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = -2
Query:  183 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 329
            TNIINGG+EC    N  + NRIGF+  +C   G+ PG+NLDC+NQRP+G
Sbjct:  198 TNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.492e-11
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = -2
Query:  171 TNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 329
            TNIINGGIECG  G N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:  244 TNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = -2
Query:  183 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 329
            TN++NGG+ECG   N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:  195 TNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = -2
Query:  168 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 329
            TNIINGG+ECG+  +D V NRIGF+  +C   GI  G NLDC +QRP+   L A
Sbjct:  279 TNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = -2
Query:  186 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 329
            TNIINGGIECG+  ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  272 TNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  246 TNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of CN185010 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.670e-11
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = -2
Query:  159 TNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 329
            TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  268 TNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
The following BLAST results are available for this feature:
BLAST of CN185010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CHI2_PEA1.142e-1154.39Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_SOLTU1.492e-1150.88Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIP_TOBAC1.492e-1160.42Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHID_SOLLC1.492e-1157.14Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_POPTR1.492e-1159.26Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_CARPA2.545e-1155.10Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI9_ORYSJ2.545e-1155.56Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA4.340e-1156.25Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_GOSHI9.670e-1150.88Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI9.670e-1150.88Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185010 ID=CN185010; Name=CN185010; organism=Citrus sinensis; type=EST; length=345bp
GGAGAAGACTCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTAC
AATAAGAGCGTAACAGTTTAGTTGTCCACCTACAAGTGTGACATCTAAAG
TTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGATCAT
GATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAGGCCGTTGGTT
GGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAACTTGCCACAGAAAG
TGGTAAAGAACCCAATACGGTTACGTACAGCGTCATTCCCAACGTAGCCA
CATTCAATTCCACCGTTGATTATATTTGTGGGTTAGACCGTATCC
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