CN185006

Overview
NameCN185006
Unique NameCN185006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:185..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 304.679 bits (779), Expect = 4.242e-82
Identity = 144/212 (67.92%), Postives = 173/212 (81.60%), Query Frame = -1 
Query:  205 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 840
            LI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   44 LIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 302.368 bits (773), Expect = 2.105e-81
Identity = 140/212 (66.04%), Postives = 174/212 (82.08%), Query Frame = -1 
Query:  205 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 840
            LI+ LRNRLKYALT  EV  I MQR + VDGKVRTD TYPAGFMDV+SI KT ENFRL+YD KGRF +H + +EEAK+KLCKV+ +  G KGIP++ T+D RTIRYPDP+IKANDT+++DLE  KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG+K WVS+P+GKGI+L+I EE  KR
Sbjct:   44 LIIFLRNRLKYALTGDEVKKICMQRFIKVDGKVRTDITYPAGFMDVISIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 301.982 bits (772), Expect = 2.750e-81
Identity = 142/212 (66.98%), Postives = 173/212 (81.60%), Query Frame = -1 
Query:  205 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 840
            LI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +    KGIP++ T+D RTIRYPDPLIK NDT++++LE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   44 LIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 301.597 bits (771), Expect = 3.591e-81
Identity = 143/212 (67.45%), Postives = 171/212 (80.66%), Query Frame = -1 
Query:  205 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 840
            LI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYP GFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR    G K IP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   44 LIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 297.745 bits (761), Expect = 5.185e-80
Identity = 142/212 (66.98%), Postives = 171/212 (80.66%), Query Frame = -1 
Query:  205 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 840
            LI+ LRNRLKYAL  REV AILMQRHV VDGKVRTD TYPAGFMDV+++  TNENFRL+YD KGRF +H + DEEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK NDT+K+DL   KITDFIKFD G +V VTGGRN GR+G I ++E+H G F+ +HI+D+L + F TRL NVF IG+  KP++SLPKGKGIKLSI EE  +R
Sbjct:   44 LIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRR 255
[Close]
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.772e-80
Identity = 146/212 (68.87%), Postives = 169/212 (79.72%), Query Frame = -1 
Query:  205 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 840
            LI+ LRNRLKYAL  REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:   44 LIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRR 255
[Close]
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.155e-79
Identity = 146/212 (68.87%), Postives = 169/212 (79.72%), Query Frame = -1 
Query:  205 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 840
            LI+ LRNRLKYAL  REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:   44 LIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
[Close]
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 1.155e-79
Identity = 146/212 (68.87%), Postives = 169/212 (79.72%), Query Frame = -1 
Query:  205 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 840
            LI+ LRNRLKYAL  REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:   44 LIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
[Close]
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 295.049 bits (754), Expect = 3.361e-79
Identity = 137/212 (64.62%), Postives = 169/212 (79.72%), Query Frame = -1 
Query:  205 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 840
            LI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   44 LIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 5.733e-79
Identity = 138/212 (65.09%), Postives = 172/212 (81.13%), Query Frame = -1 
Query:  205 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 840
            L++ LRNRLKYAL   EV  I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H +  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG+KP++SLPKGKG+KLSI EE  KR
Sbjct:   44 LLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255
The following BLAST results are available for this feature:
BLAST of CN185006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
RS4_XENTR4.242e-8267.9240S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_ICTPU2.105e-8166.0440S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4Y1_MONDO2.750e-8166.9840S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_MONDO3.591e-8167.4540S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4_YEAST5.185e-8066.9840S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4B_SCHPO6.772e-8068.8740S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4C_SCHPO1.155e-7968.8740S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4A_SCHPO1.155e-7968.8740S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4Y1_MACFU3.361e-7964.6240S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4_DROME5.733e-7965.0940S ribosomal protein S4 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185006 ID=CN185006; Name=CN185006; organism=Citrus sinensis; type=EST; length=840bp
TTTTTTTTTTTTTTTTTAAAAAAGGACAAAGCAGGTTCAAAATTGTGCTG
ATAAAAATAAAAATAAAAATAAAGATTCATTTTTGCATCGGTCCTACTTC
AGCTTTAGAGAGTGCCAATCAGCTCTAATTCAACAAGAAAAAACAAAGCA
GCAAAATGCATCCAAATTCATTGTAAAAGCTTAAGCAGCAGCCTGGGCAG
CCTGTCTCTTCCTAGCTTCCTCAATGATGGACAACTTAATACCCTTGCCC
TTAGGAAGTGACACCCATGGTTTTGAACCCTTCCCGATGGTGAACACATT
GCCTAGACGAGTTGCAAACTCATGACCAAGGGCATCTTGAATATGGATGG
TCTCAAAACTTCCCTTATGCTTTTCCCTGTTCTTGATGATTCCAACTCGA
CCTCTGTTTCTACCCCCAGTGACCATGACAATATTCCCAACATCAAACTT
GATGAAGTCAGTGATCTTGTTCTCTTCTAAGTCAAGTTTGATGGTATCAT
TGGCTTTGATGAGTGGGTCAGGGTAGCGGATGGTACGCCCATCATAGGTG
TTGATGTATGGGATACCTTTCTGGCCAAACTGGACTGATCTAACTTTGCA
AAGCTTGAATTTTGCCTCCTCATCTCTGAGGGAATGGAGACGGAAGCGAC
CCTTGGTGTCATAAAGGAGACGGAAGTTCTCGTTGGTCTTGGGAATTGAC
ACAACATCCATGAAACCAGCAGGGTAGGTCTTATCTGTCCTAACCTTCCC
ATCAACAAGAACATGTCGTTGCATCAGAATAGCAATAACTTCACGATATG
TGAGAGCATATTTCAAACGGTTTCGCAATACAAGGATCAA
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