CN185006

Overview
NameCN185006
Unique NameCN185006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:185..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.068e-28
Identity = 77/200 (38.50%), Postives = 113/200 (56.50%), Query Frame = -1
Query:  244 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGK 840
            L++++R+ LK A   RE   I+    VLVDG+ R +  +P GFMDVVSIP+T + +R+L D +GR  LH + +E A FKLCK+ +    + G   +N +DGR     D   +  D +KL + E +I + I F+  ++ +VTGGR+ G +G IK     + S   T  I+   G  F T    VF IGK  +  +SLP GK
Sbjct:   45 LMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKIKKINITRSSMPNTAVIETGAGKTFLTLKDYVFVIGK-DESVISLPGGK 242          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.899e-27
Identity = 73/208 (35.10%), Postives = 114/208 (54.81%), Query Frame = -1
Query:  247 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKG 840
            L++++R+ L YA T RE   ++ + H  +DG+VR +  YP GFMDV+ I  T E +R+L      F LH +  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ + E ++  +   +VG++V++ GGRN GRVG I + +        + I+DA G +  T L  VF I     +PW+SLP+G
Sbjct:   45 LLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLPEG 252          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.638e-25
Identity = 73/210 (34.76%), Postives = 117/210 (55.71%), Query Frame = -1
Query:  247 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 840
            L++++R+ L YA T RE   ++ + H  VDG+VR +  YP G MDV+ I  T E +R++        L  +  EEAK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ + E +I ++I  D G +V+++GGRN GRVG    I K   +H+     + I+D  G++F T L  VF IGK  +P + LP+G
Sbjct:   45 LLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPIGK-EEPLIKLPEG 250          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.767e-25
Identity = 69/194 (35.57%), Postives = 107/194 (55.15%), Query Frame = -1
Query:  283 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG 840
            L+L++R+ LKYA   RE   I+    VLVDG+VR ++  P G MDVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N +DGR   I+  DP      + K  DT+ + + E +I   I F+VG +  +TGG++ G    I   E+     + + +++  G +F T    VF +G
Sbjct:   45 LLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKTVKDYVFVVG 236          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.387e-24
Identity = 74/201 (36.82%), Postives = 113/201 (56.22%), Query Frame = -1
Query:  253 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 840
            LI ++R+ L YA T RE   IL +  +LVDG+VR D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEAK K  ++ + +  +     +N +DG     ++   D   K + T+ + + E +I   + F+VG  V VT G+N  R G I++ R+   G  + + I+D  G  F T     F IGK  KP +SLP
Sbjct:   45 LIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKGKIVEVRQFPMGWPDVVTIEDENGELFDTLKEYAFVIGK-DKPEISLP 243          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.387e-24
Identity = 72/195 (36.92%), Postives = 105/195 (53.85%), Query Frame = -1
Query:  256 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 840
            L++VLR+ L  A   RE   IL    VLVDG  R +  +P GFMDV+SIPK N+ FR+L D KGR  L  + ++++ FKL K+      + G   +N   GR I   D   K  D + L++ E KI+D IKF+ G + ++TGG++   VG I   +  + S     + +     F T    VF +G+  KP +SL
Sbjct:   45 LVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKIDEIKITQSSKSNTVLMETEEGSFLTLARYVFVVGQ-DKPVISL 237          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.883e-24
Identity = 70/207 (33.82%), Postives = 112/207 (54.11%), Query Frame = -1
Query:  247 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETI-HIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 840
            L++++R+ L YA T +E   ++ + +  +DG+VR D  +P G MDV+ I   N+ +R++        L  +  EEA FKLC++ +    + G   +N +DGR   IR  DP     DT      +KL +   +I D++    G I +V+GGRN GRVG I +  K    + +I  ++D  G++F T L  +F IG   KP + LP+G
Sbjct:   45 LLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV-EKPLIKLPEG 250          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.416e-23
Identity = 71/202 (35.15%), Postives = 113/202 (55.94%), Query Frame = -1
Query:  253 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 840
            L+ ++R+ L YA T RE   IL +   LVDGKVR D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + + E +I + + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T     F +GK  KP +SLP
Sbjct:   45 LLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGK-DKPKISLP 243          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.416e-23
Identity = 67/196 (34.18%), Postives = 109/196 (55.61%), Query Frame = -1
Query:  256 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 840
            L LV+R+ LK A   RE   I+   +VLVDG+V  D  +P GFMD++ IPKT E +R+L D KGR +L+ +  EE   KLCK+ +    + G   +N +DG+ +   +      D I L + +++I +  +   G  V++TGG++ G +G +     ++ S   TI I+++   EF T     F +G+ + P +SL
Sbjct:   45 LTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLTLKDYAFVVGEDA-PAISL 237          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.939e-23
Identity = 67/203 (33.00%), Postives = 104/203 (51.23%), Query Frame = -1
Query:  256 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 840
            L+LVLR+ L YA   RE   ++    VLVDG  R D  YP G MDV+S+P  NE+F ++ D KGR +L+ ++D     KLCK+ +    + G   +N +DGR          +  + + K  D + L + E  I   ++F  G +  +TGG++ G    I   EK +   + I ++   G +F T    VF +G   KP +S+
Sbjct:   45 LLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVGDFAKIIGIEKKQLYPDIITLETENGEQFKTIRDYVFIVG-DDKPVISM 244          
The following BLAST results are available for this feature:
BLAST of CN185006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
RS4E_METTH2.068e-2838.5030S ribosomal protein S4e OS=Methanobacterium ther... [more]
RS4E_HYPBU3.899e-2735.1030S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_STAMF1.638e-2534.7630S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_METJA4.767e-2535.5730S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_PYRKO1.387e-2436.8230S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_METST1.387e-2436.9230S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_DESK16.883e-2433.8230S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_PYRHO3.416e-2335.1530S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_METS33.416e-2334.1830S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_META39.939e-2333.0030S ribosomal protein S4e OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185006 ID=CN185006; Name=CN185006; organism=Citrus sinensis; type=EST; length=840bp
TTTTTTTTTTTTTTTTTAAAAAAGGACAAAGCAGGTTCAAAATTGTGCTG
ATAAAAATAAAAATAAAAATAAAGATTCATTTTTGCATCGGTCCTACTTC
AGCTTTAGAGAGTGCCAATCAGCTCTAATTCAACAAGAAAAAACAAAGCA
GCAAAATGCATCCAAATTCATTGTAAAAGCTTAAGCAGCAGCCTGGGCAG
CCTGTCTCTTCCTAGCTTCCTCAATGATGGACAACTTAATACCCTTGCCC
TTAGGAAGTGACACCCATGGTTTTGAACCCTTCCCGATGGTGAACACATT
GCCTAGACGAGTTGCAAACTCATGACCAAGGGCATCTTGAATATGGATGG
TCTCAAAACTTCCCTTATGCTTTTCCCTGTTCTTGATGATTCCAACTCGA
CCTCTGTTTCTACCCCCAGTGACCATGACAATATTCCCAACATCAAACTT
GATGAAGTCAGTGATCTTGTTCTCTTCTAAGTCAAGTTTGATGGTATCAT
TGGCTTTGATGAGTGGGTCAGGGTAGCGGATGGTACGCCCATCATAGGTG
TTGATGTATGGGATACCTTTCTGGCCAAACTGGACTGATCTAACTTTGCA
AAGCTTGAATTTTGCCTCCTCATCTCTGAGGGAATGGAGACGGAAGCGAC
CCTTGGTGTCATAAAGGAGACGGAAGTTCTCGTTGGTCTTGGGAATTGAC
ACAACATCCATGAAACCAGCAGGGTAGGTCTTATCTGTCCTAACCTTCCC
ATCAACAAGAACATGTCGTTGCATCAGAATAGCAATAACTTCACGATATG
TGAGAGCATATTTCAAACGGTTTCGCAATACAAGGATCAA
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