CN185006
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.298e-22 Identity = 66/197 (33.50%), Postives = 108/197 (54.82%), Query Frame = -1 Query: 256 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGK--GSKPWVSL 840 L++++R+ L+ A T RE I+ +LVDG VR D +P G DVV+IPK +++R+L+D KGR+ + E+A KL K+ + + G +N +DG I + K D+I L + E ++ D +KF+ G +VM+TGG + G +G IK+ + + S + + + T VF +GK KP + L Sbjct: 40 LLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRIKSYKIVRSSAPNLVTVEGEERDITTIEDYVFVVGKKDSDKPVIDL 233
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.892e-22 Identity = 69/202 (34.16%), Postives = 113/202 (55.94%), Query Frame = -1 Query: 253 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 840 L+ ++R+ L YA T RE IL + LVDG+VR D +P G MDVVSIP+T E++R+L + G+ LH + +EEA K ++R+ + + +N +DG + PL + ++ T+ + + E +I + + F+ G V VT G+N R G I++ ++ G + + I+D G F T F +G+ KP +SLP Sbjct: 45 LLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISLP 243
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21 Identity = 62/189 (32.80%), Postives = 100/189 (52.91%), Query Frame = -1 Query: 280 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATR--LGNVFTIGK 840 L+L++R+ LK A T RE I+ + +LVDGK R D + G MDV+SIP+ N+R++ D RL + E+K KL KV + + G + ++DGR +K D++ ++L + D ++FD G+ V+VT GR GR+G + +G I ++D E + R N+ +GK Sbjct: 45 LLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRV------EGIGTIIEMRDLENPELSYRGVKENLIVVGK 227
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.176e-21 Identity = 69/202 (34.16%), Postives = 104/202 (51.49%), Query Frame = -1 Query: 235 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIK 840 L++VLR+ LK A E+ IL + VLVDGKVR D Y G D +SIP N N+R++ G+F L + D A K+CK+ + + G +N +DG T+ + K D++ L + E KI + VG++VMVT G++ G +G +K + + S + +F T VF IGK S P +G+K Sbjct: 41 LVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDS------PAVQGVK 233
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21 Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = -1 Query: 280 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 840 L +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 39 LAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21 Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = -1 Query: 280 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 840 L +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 39 LAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21 Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = -1 Query: 280 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 840 L +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 39 LAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21 Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = -1 Query: 280 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 840 L +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 39 LAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21 Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = -1 Query: 280 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 840 L +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 39 LAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21 Identity = 65/193 (33.68%), Postives = 97/193 (50.26%), Query Frame = -1 Query: 280 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 840 L +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 39 LAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231 The following BLAST results are available for this feature:
BLAST of CN185006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 102
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN185006 ID=CN185006; Name=CN185006; organism=Citrus sinensis; type=EST; length=840bpback to top |