CN185006

Overview
NameCN185006
Unique NameCN185006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:185..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 68/201 (33.83%), Postives = 109/201 (54.23%), Query Frame = -1
Query:  253 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 840
            L+ ++R+ L YA T RE   IL +   LVDG+VR D  +P G MDVVSIP+T E++R+L +  G+  LH + ++EA  K  ++R+ +  +     +N +DG     +I   D     + T+ + + E +I + + F+ G  V VT G+N  R G I++ +    G  + + I+D  G  F T     F +G   KP +SLP
Sbjct:   45 LLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYF-TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 59/203 (29.06%), Postives = 107/203 (52.71%), Query Frame = -1
Query:  256 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 840
            L+L++R+ LK A   RE   I+    +L+DG  R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L E  +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:   45 LLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.215e-20
Identity = 59/203 (29.06%), Postives = 107/203 (52.71%), Query Frame = -1
Query:  256 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 840
            L+L++R+ LK A   RE   I+    +L+DG  R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L E  +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:   45 LLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 62/203 (30.54%), Postives = 106/203 (52.22%), Query Frame = -1
Query:  256 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 840
            L+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  VTGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:   45 LLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.617e-20
Identity = 65/193 (33.68%), Postives = 98/193 (50.78%), Query Frame = -1
Query:  280 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI---RYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 840
            L +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR+L D     R   +  +EA++K  ++ +    ++G   +N  DGR I   +      K   T+K++L   +I D       +  +  GGRN G  GI+KN    K     +  I ++   G+ + T + NV +IG+
Sbjct:   39 LAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGR 231          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.030e-20
Identity = 70/209 (33.49%), Postives = 111/209 (53.11%), Query Frame = -1
Query:  247 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 840
            L++++R+ L YA T RE   ++ +  + VDG+VR D  +P G MDV+ I   +E +R++ Y  K    +  +  EEAK K+C++ +    + G   +N +DGR   IR  DP         K    + + + E +I D++ F+ G I +V  GRN GRVG I+   K  G  +T + ++D     F T    VF IGK  +P + LP+G
Sbjct:   46 LLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPIGK-EEPLIKLPEG 252          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.029e-19
Identity = 61/203 (30.05%), Postives = 105/203 (51.72%), Query Frame = -1
Query:  256 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 840
            L+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  VTGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:   45 LLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.343e-19
Identity = 60/203 (29.56%), Postives = 105/203 (51.72%), Query Frame = -1
Query:  256 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 840
            L+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  +TGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:   45 LLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.291e-19
Identity = 63/212 (29.72%), Postives = 111/212 (52.36%), Query Frame = -1
Query:  250 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEEN------KITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFE-TIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPK 840
            L++++R+ L YA   RE   I+ +  + VDG VR +  +P G MDVV IP+T + +R++ +   R  +  + +EEA+ K+C++++  + + G   I  +DG+   +   DP      +    D++ L+L E       K+ D I F+ G  V    GR+ G VG +   +  +G  E  I +++  G +F T  G +  IGK  +P V++ K
Sbjct:   48 LLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAIGK-DEPLVTVRK 258          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.993e-19
Identity = 59/203 (29.06%), Postives = 104/203 (51.23%), Query Frame = -1
Query:  256 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 840
            L+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  +TGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:   45 LLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
The following BLAST results are available for this feature:
BLAST of CN185006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
RS4E_PYRFU9.303e-2133.8330S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_METVS1.215e-2029.0630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA1.215e-2029.0630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METM53.535e-2030.5430S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_SULSO4.617e-2033.6830S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_IGNH46.030e-2033.4930S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_METM71.029e-1930.0530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM61.343e-1929.5630S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METKA2.291e-1929.7230S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_METMP2.993e-1929.0630S ribosomal protein S4e OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185006 ID=CN185006; Name=CN185006; organism=Citrus sinensis; type=EST; length=840bp
TTTTTTTTTTTTTTTTTAAAAAAGGACAAAGCAGGTTCAAAATTGTGCTG
ATAAAAATAAAAATAAAAATAAAGATTCATTTTTGCATCGGTCCTACTTC
AGCTTTAGAGAGTGCCAATCAGCTCTAATTCAACAAGAAAAAACAAAGCA
GCAAAATGCATCCAAATTCATTGTAAAAGCTTAAGCAGCAGCCTGGGCAG
CCTGTCTCTTCCTAGCTTCCTCAATGATGGACAACTTAATACCCTTGCCC
TTAGGAAGTGACACCCATGGTTTTGAACCCTTCCCGATGGTGAACACATT
GCCTAGACGAGTTGCAAACTCATGACCAAGGGCATCTTGAATATGGATGG
TCTCAAAACTTCCCTTATGCTTTTCCCTGTTCTTGATGATTCCAACTCGA
CCTCTGTTTCTACCCCCAGTGACCATGACAATATTCCCAACATCAAACTT
GATGAAGTCAGTGATCTTGTTCTCTTCTAAGTCAAGTTTGATGGTATCAT
TGGCTTTGATGAGTGGGTCAGGGTAGCGGATGGTACGCCCATCATAGGTG
TTGATGTATGGGATACCTTTCTGGCCAAACTGGACTGATCTAACTTTGCA
AAGCTTGAATTTTGCCTCCTCATCTCTGAGGGAATGGAGACGGAAGCGAC
CCTTGGTGTCATAAAGGAGACGGAAGTTCTCGTTGGTCTTGGGAATTGAC
ACAACATCCATGAAACCAGCAGGGTAGGTCTTATCTGTCCTAACCTTCCC
ATCAACAAGAACATGTCGTTGCATCAGAATAGCAATAACTTCACGATATG
TGAGAGCATATTTCAAACGGTTTCGCAATACAAGGATCAA
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