CN185006

Overview
NameCN185006
Unique NameCN185006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:185..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.105e-19
Identity = 64/194 (32.99%), Postives = 99/194 (51.03%), Query Frame = -1
Query:  256 LVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 834
            +++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+L D KGR  LH L +     KLC++ +    + G   +N  DG  I   +      D++ L + + ++   +KF+VGN+ MV GG++ G  G I++ RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   41 IIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.940e-18
Identity = 64/194 (32.99%), Postives = 96/194 (49.48%), Query Frame = -1
Query:  256 LVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 834
            +++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+  D KGR  LH L       KLC++ +    + G   +N  DG  I   +      D++ L L + +I   ++F VGN+ MV GG++ G +G I + RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   41 IIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNE-YSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKITEIREVKSSRHNTVAISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.309e-18
Identity = 64/198 (32.32%), Postives = 95/198 (47.98%), Query Frame = -1
Query:  250 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKG-SFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPK 840
            L+ ++R+ LK +   RE   IL    V VDGK   +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D   K  D   + + + KI++ IK   GN   +T G +  + G I   E  +G S   +H Q+     F+T   +VF IG     +V  P+
Sbjct:   40 LLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSPE 231          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.309e-18
Identity = 64/194 (32.99%), Postives = 98/194 (50.52%), Query Frame = -1
Query:  256 LVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 834
            L++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+L D KGR  L+ L +     KLC++ +    + G   +N  DG  I   +      D++ L + +  +   +KF+VGN+ MV GG++ G  G I++ RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   41 LIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 57/194 (29.38%), Postives = 95/194 (48.97%), Query Frame = -1
Query:  283 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN---REKHKGSFETIHIQDALGHEFATRLGNVFTIG 840
            L L+L++ L  A T RE   ++++  ++VDG+VR D  +P G MDV+SIP ++  FR++ D         +  E+AK+K  ++ +    + G   +N  DGR I  P   +   +     T+K+++    I    +   G   ++ GGRN G  G+IK     +  K  +  + I+   G    T L NV  IG
Sbjct:   39 LALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQTNLQNVMVIG 232          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 63/198 (31.82%), Postives = 96/198 (48.48%), Query Frame = -1
Query:  280 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--------RYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRN---RGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGK 840
            L ++L+  LK   T RE   I+    VLVDGKVR D  YP G MDVV IP  +   R++ D        ++  E+AK+K  ++ +    + G+  +N  DGR I        +Y  P +    T+K++L E KIT       G   M+ GGRN    G++  I+  +  +  +  + ++   G  F T L NV  IG+
Sbjct:   39 LAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAIGE 233          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.658e-17
Identity = 60/192 (31.25%), Postives = 91/192 (47.40%), Query Frame = -1
Query:  274 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT---IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGS 840
            L ++LR+   YA T RE   I+ + +V VDGKVR D  YP G MDV+ +   NE +R++ D     R   +   EA  K+C++      + G   +N +DGR I       +  +T   + ++LE+ K+ D+        V+   G N GR G + N  +     + I    A   EF T L  +  IGK S
Sbjct:   39 LAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLINWVRSFRKRDAIATVKAKDSEFRTVLNYLLVIGKES 230          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 58/187 (31.02%), Postives = 90/187 (48.13%), Query Frame = -1
Query:  283 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNRE-KHKGSFETIHIQDALGHEFATRLGNVFTIG 840
            L+ ++R+ L+ +   RE   IL    V VDGKV  ++ +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I   D +   L + KIT+ IK   GN   +TGG + G  G I   E K   S   +H  +     F T   +VF IG
Sbjct:   40 LLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEG----FTTVKDHVFVIG 220          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.371e-16
Identity = 54/153 (35.29%), Postives = 80/153 (52.29%), Query Frame = -1
Query:  391 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 840
            L +++R+ LKYA T RE   I+ + +V +DG +R D  +P G MDVV I  T E +R++ D K  + L  +  EEA  KL +V      + G   ++ +DGR +     +   IK  DT+  DL+   I   I F +G   +VT G N G  G
Sbjct:   40 LAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192          
BLAST of CN185006 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.177e-15
Identity = 57/187 (30.48%), Postives = 96/187 (51.34%), Query Frame = -1
Query:  283 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIG 840
            L++ LR+ LK     RE+  IL    V+VDGKV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + + + +I D +KF  GN V +TGG + G +  IK+ E    S E  +H+ +     F+T    VF +G
Sbjct:   40 LLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG 220          
The following BLAST results are available for this feature:
BLAST of CN185006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
RS4E_METAC5.105e-1932.9930S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_METBF1.940e-1832.9930S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_THEAC3.309e-1832.3230S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_METMA3.309e-1832.9930S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_SULTO4.321e-1829.3830S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4E_SULAC4.321e-1831.8230S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]
RS4E_CALMQ3.658e-1731.2530S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_THEVO2.371e-1631.0230S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]
RS4E_PYRIL2.371e-1635.2930S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_PICTO1.177e-1530.4830S ribosomal protein S4e OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185006 ID=CN185006; Name=CN185006; organism=Citrus sinensis; type=EST; length=840bp
TTTTTTTTTTTTTTTTTAAAAAAGGACAAAGCAGGTTCAAAATTGTGCTG
ATAAAAATAAAAATAAAAATAAAGATTCATTTTTGCATCGGTCCTACTTC
AGCTTTAGAGAGTGCCAATCAGCTCTAATTCAACAAGAAAAAACAAAGCA
GCAAAATGCATCCAAATTCATTGTAAAAGCTTAAGCAGCAGCCTGGGCAG
CCTGTCTCTTCCTAGCTTCCTCAATGATGGACAACTTAATACCCTTGCCC
TTAGGAAGTGACACCCATGGTTTTGAACCCTTCCCGATGGTGAACACATT
GCCTAGACGAGTTGCAAACTCATGACCAAGGGCATCTTGAATATGGATGG
TCTCAAAACTTCCCTTATGCTTTTCCCTGTTCTTGATGATTCCAACTCGA
CCTCTGTTTCTACCCCCAGTGACCATGACAATATTCCCAACATCAAACTT
GATGAAGTCAGTGATCTTGTTCTCTTCTAAGTCAAGTTTGATGGTATCAT
TGGCTTTGATGAGTGGGTCAGGGTAGCGGATGGTACGCCCATCATAGGTG
TTGATGTATGGGATACCTTTCTGGCCAAACTGGACTGATCTAACTTTGCA
AAGCTTGAATTTTGCCTCCTCATCTCTGAGGGAATGGAGACGGAAGCGAC
CCTTGGTGTCATAAAGGAGACGGAAGTTCTCGTTGGTCTTGGGAATTGAC
ACAACATCCATGAAACCAGCAGGGTAGGTCTTATCTGTCCTAACCTTCCC
ATCAACAAGAACATGTCGTTGCATCAGAATAGCAATAACTTCACGATATG
TGAGAGCATATTTCAAACGGTTTCGCAATACAAGGATCAA
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