CN185005

Overview
NameCN185005
Unique NameCN185005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185005_ssr236 microsatellite CN185005_ssr236:236..247. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:424..1180. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.842e-14
Identity = 48/169 (28.40%), Postives = 79/169 (46.75%), Query Frame = -1
Query:  135 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 629
            N     +VS S+D +V++W++       TL  H+  V+ V+ + DGSL  SG  DG++ +WD A G+ + +L  D    +  + FSPN +Y L +  + ++K+WD      ++  +                      N YC   N+SV G   + SG  D  I VW +
Sbjct:  172 NPQSSLVVSGSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWDTANGQCVKTLVDDENPPVAFVKFSPNGKYILSSNLDNTLKLWDFGKGKTLKQYQ------------------GHENNKYCIFANFSVTGGKWIISGSEDCKIYVWNL 322          

HSP 2 Score: 26.5646 bits (57), Expect = 3.842e-14
Identity = 15/43 (34.88%), Postives = 23/43 (53.49%), Query Frame = -3
Query:  628 RQIVSASRDCTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPQ 756
            + IV+AS D T+K++           +G  HT +V C  F+PQ
Sbjct:  134 KSIVTASDDKTLKIYEVPTVKMAKTLKG--HTNYVFCCNFNPQ 174          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: TG125_CAEEL (WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 47/169 (27.81%), Postives = 79/169 (46.75%), Query Frame = -1
Query:  135 NTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGST-LFSGYTDGVIRVWGI 629
            N     +VS S+D +V++W++       TL  H+  V+ V+ + DGSL ASG  DG++ +WD A G+ + +L  D    +  + FSPN +Y L +  + ++K+WD      ++                         + YC   N+SV G   + SG  D  I +W +
Sbjct:  180 NPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQ------------------YTGHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNL 330          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: NLE1_MOUSE (Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.247e-12
Identity = 50/173 (28.90%), Postives = 78/173 (45.09%), Query Frame = -1
Query:  141 LVLGSAPNTLQPTIVSASWDRTVKVWN-LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 650
            LV G  P  L    VS S D T+ +W+   + K  A + GH   +N V  SPD  + AS   D  I LWD   GK L SL     AV      + +R  +  +++ ++K+WD++++ +  DL                        +Y  +++WS DG  + SG  D  +R+W
Sbjct:  335 LVRGQGPERL----VSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLATDL------------------PGHADEVY--AVDWSPDGQRVASGGKDKCLRIW 483          

HSP 2 Score: 25.409 bits (54), Expect = 3.247e-12
Identity = 16/44 (36.36%), Postives = 23/44 (52.27%), Query Frame = -3
Query:  622 IVSASRDCTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPQHA 750
            + SAS+D TIK+W    G    T+Q    H  WV+ +  S  +A
Sbjct:  260 LYSASQDRTIKVWRAHDGVLCRTLQ---GHGHWVNTMALSTDYA 300          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  294 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDL 611
            +VSAS+D T ++W++          GH+  + ++A  PDGSL +SGG D +  +WDL  GK +  LD     I A+ +SPN Y L  ++ + ++KIWDL   S+   +
Sbjct:  280 LVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTI 387          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: NLE1_HUMAN (Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.216e-12
Identity = 50/173 (28.90%), Postives = 78/173 (45.09%), Query Frame = -1
Query:  141 LVLGSAPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 650
            LV G  P  L    VS S D T+ +W+ +  K   T + GH   +N V  SPD  + AS   D  I LWD   GK L SL     AV      + +R  +  +++ ++K+WD++++ +  DL                        +Y  +++WS DG  + SG  D  +R+W
Sbjct:  335 LVRGQGPERL----VSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDL------------------PGHADEVY--AVDWSPDGQRVASGGKDKCLRIW 483          

HSP 2 Score: 25.409 bits (54), Expect = 4.216e-12
Identity = 16/44 (36.36%), Postives = 23/44 (52.27%), Query Frame = -3
Query:  622 IVSASRDCTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPQHA 750
            + SAS+D TIK+W    G    T+Q    H  WV+ +  S  +A
Sbjct:  260 LYSASQDRTIKVWRAHDGVLCRTLQ---GHGHWVNTMALSTDYA 300          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: NLE1_BOVIN (Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.474e-12
Identity = 50/173 (28.90%), Postives = 78/173 (45.09%), Query Frame = -1
Query:  141 LVLGSAPNTLQPTIVSASWDRTVKVWN-LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 650
            LV G  P  L    VS S D T+ +W+   + K  A + GH   +N V  SPD  + AS   D  I LWD   GK L SL     AV      + +R  +  +++ ++K+WD++++ +  DL                        +Y  +++WS DG  + SG  D  +R+W
Sbjct:  335 LVRGQGPERL----VSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLSTDL------------------PGHADEVY--AVDWSPDGQRVASGGKDKCLRIW 483          

HSP 2 Score: 25.409 bits (54), Expect = 5.474e-12
Identity = 16/44 (36.36%), Postives = 23/44 (52.27%), Query Frame = -3
Query:  622 IVSASRDCTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPQHA 750
            + SAS+D TIK+W    G    T+Q    H  WV+ +  S  +A
Sbjct:  260 LYSASQDRTIKVWRAHDGVLCRTLQ---GHGHWVNTMALSTDYA 300          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 7.109e-12
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  291 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLK 611
            IVS S D+T+K+W+ +N +     +   G+ N V  +P G+  AS G D  + +WD+   K L  Y + +G V + + F P+  Y + A+++ ++KI DL    ++  L+
Sbjct:  159 IVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGV-NCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQ 267          

HSP 2 Score: 31.187 bits (69), Expect = 7.109e-12
Identity = 15/41 (36.59%), Postives = 24/41 (58.54%), Query Frame = -3
Query:  631 IVSASRDCTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSP 750
            + +AS D +IK+W+   +   Y++     HT WV C +FSP
Sbjct:  117 LATASEDKSIKVWSMYRQRFLYSLYR---HTHWVRCAKFSP 154          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: NLE1_PONAB (Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.227e-12
Identity = 49/173 (28.32%), Postives = 78/173 (45.09%), Query Frame = -1
Query:  141 LVLGSAPNTLQPTIVSASWDRTVKVWNLSNCKLRAT-LAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 650
            L+ G  P  L    VS S D T+ +W+ +  K   T + GH   +N V  SPD  + AS   D  I LWD   GK L SL     AV      + +R  +  +++ ++K+WD++++ +  DL                        +Y  +++WS DG  + SG  D  +R+W
Sbjct:  335 LMRGQGPERL----VSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAMDL------------------PGHADEVY--AVDWSPDGQRVASGGKDKCLRIW 483          

HSP 2 Score: 25.409 bits (54), Expect = 9.227e-12
Identity = 16/44 (36.36%), Postives = 23/44 (52.27%), Query Frame = -3
Query:  622 IVSASRDCTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPQHA 750
            + SAS+D TIK+W    G    T+Q    H  WV+ +  S  +A
Sbjct:  260 LYSASQDRTIKVWRAHDGVLCRTLQ---GHGHWVNTMALSTDYA 300          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.246e-12
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  291 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLK 611
            IVS S D+T+K+W+ +N +     +   G+ N V  +P G+  AS G D  + +WD+   K L  Y + +G V + + F P + Y + A+++ ++KI DL    ++  L+
Sbjct:  159 IVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGV-NCISFHPSDNYLVTASSDGTLKILDLLEGRLIYTLQ 267          

HSP 2 Score: 31.187 bits (69), Expect = 9.246e-12
Identity = 15/41 (36.59%), Postives = 24/41 (58.54%), Query Frame = -3
Query:  631 IVSASRDCTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSP 750
            + +AS D +IK+W+   +   Y++     HT WV C +FSP
Sbjct:  117 LATASEDKSIKVWSMYRQRFLYSLYR---HTHWVRCAKFSP 154          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 49/160 (30.63%), Postives = 74/160 (46.25%), Query Frame = -1
Query:  135 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 605
            S S DRT ++W+          AGH   V+ V   P+ +  A+G  D  + LW   +G   RL++   G V+ +L FSPN +Y   A  +Q +K+WDL S ++ ++L+                      NI  TSL +S D   + S   D  +RVW I
Sbjct:  401 SGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVL-SLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELR------------------GHTDNI--TSLTFSPDSGLIASASMDNSVRVWDI 539          
The following BLAST results are available for this feature:
BLAST of CN185005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
TG125_CAEBR3.842e-1428.40WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
TG125_CAEEL2.302e-1227.81WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
NLE1_MOUSE3.247e-1228.90Notchless protein homolog 1 OS=Mus musculus GN=Nle... [more]
YIDC_SCHPO3.927e-1236.11Uncharacterized WD repeat-containing protein C227.... [more]
NLE1_HUMAN4.216e-1228.90Notchless protein homolog 1 OS=Homo sapiens GN=NLE... [more]
NLE1_BOVIN5.474e-1228.90Notchless protein homolog 1 OS=Bos taurus GN=NLE1 ... [more]
WD51B_HUMAN7.109e-1230.91WD repeat-containing protein 51B OS=Homo sapiens G... [more]
NLE1_PONAB9.227e-1228.32Notchless protein homolog 1 OS=Pongo abelii GN=NLE... [more]
WD51B_PONAB9.246e-1230.91WD repeat-containing protein 51B OS=Pongo abelii G... [more]
TAF5L_HUMAN1.949e-1130.63TAF5-like RNA polymerase II p300/CBP-associated fa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185005 ID=CN185005; Name=CN185005; organism=Citrus sinensis; type=EST; length=758bp
GAGGCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGA
AACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAG
TTTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTG
ATCACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCA
GTTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGG
TGGTGGCCTCAGATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCC
TCGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGT
CGCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGA
CAGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCAC
AACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGG
CGACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCC
TAAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAG
GCGGAAACGATAGTGGGCTGAAGCGTGTTGGGGGCTGAACCTAACACAAG
AAACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGCACTCG
CCGAGCGTGTTCCACAACTTGATCGTACAGTCACGAGAGGCCGATACAAT
CTGACGGT
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