CN185005
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: Y1491_SYNY3 (Uncharacterized WD repeat-containing protein sll1491 OS=Synechocystis sp. (strain PCC 6803) GN=sll1491 PE=4 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11 Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = -1 Query: 135 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 593 DRT+K W+ + +L T G++N +AV+PDG G + W+LA+ K L+S+ ++ I+ + SPN W+ A E +I I+DL + V L+ + SL +S DG+TL+SG D +++W + Sbjct: 210 DRTIKFWDANTFELLGTSPQQPGFINGLAVTPDGRKLV-GAVRNFVKAWNLADAKELFSVRGPSLEINTIAVSPNNRWVATANKEGTIMIFDLANGKQVTTLR--------------------GHQGWVLSLAFSPDGNTLYSGAEDKTVKIWDL 343
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: WD51B_MOUSE (WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 2.622e-11 Identity = 38/159 (23.90%), Postives = 71/159 (44.65%), Query Frame = -1 Query: 141 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 611 IVS S D+T+K+W+ +N + + G+ N V +P+G+ AS G D + +WD+ K L + ++ L F P + A+++ ++K+ DL ++ L+ ++++S DG L SG D + +W Sbjct: 159 IVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVF--------------------TVSFSKDGELLTSGGADAQVLIW 297 HSP 2 Score: 33.113 bits (74), Expect = 2.622e-11 Identity = 16/41 (39.02%), Postives = 25/41 (60.98%), Query Frame = -3 Query: 631 IVSASRDCTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSP 750 +V+AS D +IK+W+ + Y++ HT WV C +FSP Sbjct: 117 LVTASEDKSIKVWSMFRQRFLYSLYR---HTHWVRCAKFSP 154
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 2.632e-11 Identity = 28/101 (27.72%), Postives = 48/101 (47.52%), Query Frame = -1 Query: 318 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFS---PNRYWLCAATEQSIKIWDLE 611 + + S D+T+K+W L+ + AT GH +V V P G S G D I +WD+A+G+ + +++ C N + + IK+W L+ Sbjct: 319 LATGSRDKTIKIWELATGRCLATYIGHDNWVRAVRFHPCGKFLLSVGDDKTIRVWDIAQGRCIKTINEAHTHFISCLDFCLHNPHIATGGVDDVIKVWKLQ 419 HSP 2 Score: 33.113 bits (74), Expect = 2.632e-11 Identity = 19/40 (47.50%), Postives = 23/40 (57.50%), Query Frame = -3 Query: 634 IVSASRDCTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFS 750 I S S D TIK WN + GEC T +E H+ V C+ FS Sbjct: 247 IASCSNDQTIKTWNIVKGECLATYRE---HSHVVECLAFS 283
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 2.652e-11 Identity = 33/110 (30.00%), Postives = 59/110 (53.64%), Query Frame = -1 Query: 327 VLGSAPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIW 647 V G + N IVS S+D V++W+++ + ++ H+ V V + DG+L SG DG + +WD G+ L S + G + + FSPN ++ A T + ++++W Sbjct: 133 VFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNTLRLW 242 HSP 2 Score: 28.8758 bits (63), Expect = 2.652e-11 Identity = 17/41 (41.46%), Postives = 23/41 (56.10%), Query Frame = -3 Query: 628 IVSASRDCTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPQ 750 I SAS D TIK+W+ E ++ H E+V V F+PQ Sbjct: 103 ICSASDDKTIKIWDV--ESGKMVKTLKGHKEYVFGVSFNPQ 141
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11 Identity = 51/160 (31.87%), Postives = 72/160 (45.00%), Query Frame = -1 Query: 141 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSV--DGSTLFSGYTDGVIRVW 611 +VS S D TVK+W+ S K R TL GHTG VN+V + D L SG D I +W L L++ A + +L + +R + C + + +IK WD+E K V L + W + D L SG DGV++VW Sbjct: 366 LVSGSADCTVKLWHFSGGK-RITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSC-SLDGTIKQWDIEKKKCVHTLFGHIEGV------------------------WEIAADHLRLISGAHDGVVKVW 499
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11 Identity = 53/164 (32.32%), Postives = 78/164 (47.56%), Query Frame = -1 Query: 135 TIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 614 TIV+ S D VKVW S+ KL TL GH V +V +S +G++ AS D I LWDL GK++ S+DAG V + FSP+ ++ + + I+ +ES L + + S+ +S DG L SG DG+I ++ I Sbjct: 34 TIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDT--------------------RGKFILSIAYSPDGKYLASGAIDGIINIFDI 177
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: YCW2_YEAST (WD repeat-containing protein YCR072C OS=Saccharomyces cerevisiae GN=YCR072C PE=1 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11 Identity = 47/160 (29.38%), Postives = 75/160 (46.88%), Query Frame = -1 Query: 141 IVSASWDRTVKVWN-LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 611 +V+AS D T+ +WN L + K A + GH VN VA SPDG S D I LWD +GK + + +V S R + + + ++K+WD+ ++ + DL +Y +++WSVDG + SG D ++R+W Sbjct: 374 MVTASDDYTMFLWNPLKSTKPIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVASVYQVAWSSDCRLLVSCSKDTTLKVWDVRTRKLSVDL------------------PGHKDEVY--TVDWSVDGKRVCSGGKDKMVRLW 513
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: GBB3_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Mus musculus GN=Gnb3 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11 Identity = 55/194 (28.35%), Postives = 87/194 (44.85%), Query Frame = -1 Query: 141 RSASASTRFKRETLTLSGFLVLGSAPNTLQPT-IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 707 +S + + RE +G+L S L IV++S D T +W++ + + GHTG ++AVSPD L SG D LWD+ EG R + I+A+CF PN +C ++ S +++DL + + + +I C TS+ +S+ G LF+GY D VW Sbjct: 127 KSREGNVKVSRELSAHTGYL---SCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDYKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSQE--------------------SIICGITSVAFSLSGRLLFAGYDDFNCNVW 297
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: WSB2_HUMAN (WD repeat and SOCS box-containing protein 2 OS=Homo sapiens GN=WSB2 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 7.481e-11 Identity = 33/115 (28.70%), Postives = 58/115 (50.43%), Query Frame = -1 Query: 309 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-------------IHALCFSPNRYWLC-AATEQSIKIWDLESKS 611 + SA+ +++V +W++ + L L GH V + SPD +L + D +++WD G+RL SL V + ++CFSP +L A ++ ++IW LE K+ Sbjct: 212 LCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERLRSLHHTQVDPAMDDSDVHISSLRSVCFSPEGLYLATVADDRLLRIWALELKT 326 HSP 2 Score: 34.2686 bits (77), Expect = 7.481e-11 Identity = 17/40 (42.50%), Postives = 24/40 (60.00%), Query Frame = -3 Query: 631 IVSASRDCTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 750 +VSASRD T+++W+ L + IQ H +WV C SP Sbjct: 169 LVSASRDKTLRIWD-LNKHGKQIQVLSGHLQWVYCCSISP 207
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 9.565e-11 Identity = 31/99 (31.31%), Postives = 55/99 (55.56%), Query Frame = -1 Query: 318 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 611 + SA+ D TVK+W+L+ K+ + GHTG VN V P+ L ASG D I WDL + + + ++ + ++ F+P+ L + + S++++ E Sbjct: 162 LASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260 HSP 2 Score: 29.261 bits (64), Expect = 9.565e-11 Identity = 15/41 (36.59%), Postives = 24/41 (58.54%), Query Frame = -3 Query: 631 IVSASRDCTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSP 750 + S S+D IKLW+ + C + + H++ V C+RFSP Sbjct: 120 VASGSQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSP 157 The following BLAST results are available for this feature:
BLAST of CN185005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185005 ID=CN185005; Name=CN185005; organism=Citrus sinensis; type=EST; length=758bpback to top |