CN185005

Overview
NameCN185005
Unique NameCN185005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: Y1491_SYNY3 (Uncharacterized WD repeat-containing protein sll1491 OS=Synechocystis sp. (strain PCC 6803) GN=sll1491 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = -1
Query:  135 DRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 593
            DRT+K W+ +  +L  T     G++N +AV+PDG     G     +  W+LA+ K L+S+   ++ I+ +  SPN  W+  A  E +I I+DL +   V  L+                        +  SL +S DG+TL+SG  D  +++W +
Sbjct:  210 DRTIKFWDANTFELLGTSPQQPGFINGLAVTPDGRKLV-GAVRNFVKAWNLADAKELFSVRGPSLEINTIAVSPNNRWVATANKEGTIMIFDLANGKQVTTLR--------------------GHQGWVLSLAFSPDGNTLYSGAEDKTVKIWDL 343          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: WD51B_MOUSE (WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.622e-11
Identity = 38/159 (23.90%), Postives = 71/159 (44.65%), Query Frame = -1
Query:  141 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 611
            IVS S D+T+K+W+ +N +     +   G+ N V  +P+G+  AS G D  + +WD+   K L      +  ++ L F P     + A+++ ++K+ DL    ++  L+                           ++++S DG  L SG  D  + +W
Sbjct:  159 IVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVF--------------------TVSFSKDGELLTSGGADAQVLIW 297          

HSP 2 Score: 33.113 bits (74), Expect = 2.622e-11
Identity = 16/41 (39.02%), Postives = 25/41 (60.98%), Query Frame = -3
Query:  631 IVSASRDCTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSP 750
            +V+AS D +IK+W+   +   Y++     HT WV C +FSP
Sbjct:  117 LVTASEDKSIKVWSMFRQRFLYSLYR---HTHWVRCAKFSP 154          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.632e-11
Identity = 28/101 (27.72%), Postives = 48/101 (47.52%), Query Frame = -1
Query:  318 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFS---PNRYWLCAATEQSIKIWDLE 611
            + + S D+T+K+W L+  +  AT  GH  +V  V   P G    S G D  I +WD+A+G+ + +++        C      N +      +  IK+W L+
Sbjct:  319 LATGSRDKTIKIWELATGRCLATYIGHDNWVRAVRFHPCGKFLLSVGDDKTIRVWDIAQGRCIKTINEAHTHFISCLDFCLHNPHIATGGVDDVIKVWKLQ 419          

HSP 2 Score: 33.113 bits (74), Expect = 2.632e-11
Identity = 19/40 (47.50%), Postives = 23/40 (57.50%), Query Frame = -3
Query:  634 IVSASRDCTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFS 750
            I S S D TIK WN + GEC  T +E   H+  V C+ FS
Sbjct:  247 IASCSNDQTIKTWNIVKGECLATYRE---HSHVVECLAFS 283          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.652e-11
Identity = 33/110 (30.00%), Postives = 59/110 (53.64%), Query Frame = -1
Query:  327 VLGSAPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIW 647
            V G + N     IVS S+D  V++W+++  +    ++ H+  V  V  + DG+L  SG  DG + +WD   G+ L   S + G  +  + FSPN  ++ A T + ++++W
Sbjct:  133 VFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNTLRLW 242          

HSP 2 Score: 28.8758 bits (63), Expect = 2.652e-11
Identity = 17/41 (41.46%), Postives = 23/41 (56.10%), Query Frame = -3
Query:  628 IVSASRDCTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPQ 750
            I SAS D TIK+W+   E    ++    H E+V  V F+PQ
Sbjct:  103 ICSASDDKTIKIWDV--ESGKMVKTLKGHKEYVFGVSFNPQ 141          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 51/160 (31.87%), Postives = 72/160 (45.00%), Query Frame = -1
Query:  141 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSV--DGSTLFSGYTDGVIRVW 611
            +VS S D TVK+W+ S  K R TL GHTG VN+V +  D  L  SG  D  I +W L     L++  A    + +L  + +R + C + + +IK WD+E K  V  L   +                           W +  D   L SG  DGV++VW
Sbjct:  366 LVSGSADCTVKLWHFSGGK-RITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSC-SLDGTIKQWDIEKKKCVHTLFGHIEGV------------------------WEIAADHLRLISGAHDGVVKVW 499          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 53/164 (32.32%), Postives = 78/164 (47.56%), Query Frame = -1
Query:  135 TIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 614
            TIV+ S D  VKVW  S+ KL    TL GH   V +V +S +G++ AS   D  I LWDL  GK++ S+DAG V    + FSP+  ++   +    + I+ +ES      L                      +  +  S+ +S DG  L SG  DG+I ++ I
Sbjct:   34 TIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDT--------------------RGKFILSIAYSPDGKYLASGAIDGIINIFDI 177          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: YCW2_YEAST (WD repeat-containing protein YCR072C OS=Saccharomyces cerevisiae GN=YCR072C PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 47/160 (29.38%), Postives = 75/160 (46.88%), Query Frame = -1
Query:  141 IVSASWDRTVKVWN-LSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSTLFSGYTDGVIRVW 611
            +V+AS D T+ +WN L + K  A + GH   VN VA SPDG    S   D  I LWD  +GK + +      +V      S  R  +  + + ++K+WD+ ++ +  DL                        +Y  +++WSVDG  + SG  D ++R+W
Sbjct:  374 MVTASDDYTMFLWNPLKSTKPIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVASVYQVAWSSDCRLLVSCSKDTTLKVWDVRTRKLSVDL------------------PGHKDEVY--TVDWSVDGKRVCSGGKDKMVRLW 513          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: GBB3_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Mus musculus GN=Gnb3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 55/194 (28.35%), Postives = 87/194 (44.85%), Query Frame = -1
Query:  141 RSASASTRFKRETLTLSGFLVLGSAPNTLQPT-IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSTLFSGYTDGVIRVW 707
            +S   + +  RE    +G+L   S    L    IV++S D T  +W++   + +    GHTG   ++AVSPD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +C  ++  S +++DL +   +     +                    +I C  TS+ +S+ G  LF+GY D    VW
Sbjct:  127 KSREGNVKVSRELSAHTGYL---SCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDYKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSQE--------------------SIICGITSVAFSLSGRLLFAGYDDFNCNVW 297          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: WSB2_HUMAN (WD repeat and SOCS box-containing protein 2 OS=Homo sapiens GN=WSB2 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 7.481e-11
Identity = 33/115 (28.70%), Postives = 58/115 (50.43%), Query Frame = -1
Query:  309 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-------------IHALCFSPNRYWLC-AATEQSIKIWDLESKS 611
            + SA+ +++V +W++ +  L   L GH   V +   SPD +L  +   D  +++WD   G+RL SL    V             + ++CFSP   +L   A ++ ++IW LE K+
Sbjct:  212 LCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERLRSLHHTQVDPAMDDSDVHISSLRSVCFSPEGLYLATVADDRLLRIWALELKT 326          

HSP 2 Score: 34.2686 bits (77), Expect = 7.481e-11
Identity = 17/40 (42.50%), Postives = 24/40 (60.00%), Query Frame = -3
Query:  631 IVSASRDCTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSP 750
            +VSASRD T+++W+ L +    IQ    H +WV C   SP
Sbjct:  169 LVSASRDKTLRIWD-LNKHGKQIQVLSGHLQWVYCCSISP 207          
BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 9.565e-11
Identity = 31/99 (31.31%), Postives = 55/99 (55.56%), Query Frame = -1
Query:  318 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 611
            + SA+ D TVK+W+L+  K+ +   GHTG VN V   P+  L ASG  D  I  WDL + + +  ++     + ++ F+P+   L +  + S++++  E
Sbjct:  162 LASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260          

HSP 2 Score: 29.261 bits (64), Expect = 9.565e-11
Identity = 15/41 (36.59%), Postives = 24/41 (58.54%), Query Frame = -3
Query:  631 IVSASRDCTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSP 750
            + S S+D  IKLW+   + C +  +    H++ V C+RFSP
Sbjct:  120 VASGSQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSP 157          
The following BLAST results are available for this feature:
BLAST of CN185005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
Y1491_SYNY32.545e-1129.03Uncharacterized WD repeat-containing protein sll14... [more]
WD51B_MOUSE2.622e-1123.90WD repeat-containing protein 51B OS=Mus musculus G... [more]
LIS1_DICDI2.632e-1127.72Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
WDR5_DICDI2.652e-1130.00WD repeat-containing protein 5 homolog OS=Dictyost... [more]
POF1_SCHPO3.324e-1131.88F-box/WD repeat-containing protein pof1 OS=Schizos... [more]
WDR61_DANRE4.342e-1132.32WD repeat-containing protein 61 OS=Danio rerio GN=... [more]
YCW2_YEAST7.406e-1129.38WD repeat-containing protein YCR072C OS=Saccharomy... [more]
GBB3_MOUSE7.406e-1128.35Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
WSB2_HUMAN7.481e-1128.70WD repeat and SOCS box-containing protein 2 OS=Hom... [more]
KTNB1_MOUSE9.565e-1131.31Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006I20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185005 ID=CN185005; Name=CN185005; organism=Citrus sinensis; type=EST; length=758bp
GAGGCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGA
AACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAG
TTTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTG
ATCACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCA
GTTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGG
TGGTGGCCTCAGATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCC
TCGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGT
CGCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGA
CAGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCAC
AACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGG
CGACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCC
TAAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAG
GCGGAAACGATAGTGGGCTGAAGCGTGTTGGGGGCTGAACCTAACACAAG
AAACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGCACTCG
CCGAGCGTGTTCCACAACTTGATCGTACAGTCACGAGAGGCCGATACAAT
CTGACGGT
back to top