CN185005

Overview
NameCN185005
Unique NameCN185005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185005 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 9.567e-11
Identity = 31/99 (31.31%), Postives = 55/99 (55.56%), Query Frame = -1 
Query:  318 IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 611
            + SA+ D TVK+W+L+  K+ +   GHTG VN V   P+  L ASG  D  I  WDL + + +  ++     + ++ F+P+   L +  + S++++  E
Sbjct:  162 LASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260

HSP 2 Score: 29.261 bits (64), Expect = 9.567e-11
Identity = 15/41 (36.59%), Postives = 24/41 (58.54%), Query Frame = -3 
Query:  631 IVSASRDCTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSP 750
            + S S+D  IKLW+   + C +  +    H++ V C+RFSP
Sbjct:  120 VASGSQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSP 157
The following BLAST results are available for this feature:
BLAST of CN185005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
KTNB1_HUMAN9.567e-1131.31Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185005 ID=CN185005; Name=CN185005; organism=Citrus sinensis; type=EST; length=758bp
GAGGCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGA
AACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAG
TTTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTG
ATCACACCATCTGTATAACCACTGAACAAGGTGCTTCCATCAACACTCCA
GTTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGG
TGGTGGCCTCAGATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCC
TCGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGT
CGCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGA
CAGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCAC
AACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGG
CGACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCC
TAAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAG
GCGGAAACGATAGTGGGCTGAAGCGTGTTGGGGGCTGAACCTAACACAAG
AAACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGCACTCG
CCGAGCGTGTTCCACAACTTGATCGTACAGTCACGAGAGGCCGATACAAT
CTGACGGT
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