CN184994

Overview
NameCN184994
Unique NameCN184994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig164 contig Csv1_Contig164:32..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 302.753 bits (774), Expect = 4.421e-83
Identity = 145/168 (86.31%), Postives = 158/168 (94.05%), Query Frame = -1
Query:  269 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 772
            GARMVRELF+MAR+KKAC++FFDE+DAIGGARFDDG GGDNEVQRTMLE++NQLDGFD RGNIKVLMATNRPDTLDPAL+RPGRLDRK+EF LPDLE RT IFKIH R+M+ ERDIRFELLARLCPNSTGA+IRSVCTEAGMFAIRARRK  TEKDFL+AVNKVIK Y
Sbjct:  253 GARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSY 420          

HSP 2 Score: 27.335 bits (59), Expect = 4.421e-83
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = -3
Query:  231 SKFSATPKYMVYN 269
            +KFSATP+YM YN
Sbjct:  421 AKFSATPRYMTYN 433          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 9.813e-83
Identity = 148/168 (88.10%), Postives = 158/168 (94.05%), Query Frame = -1
Query:  269 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 772
            GARMVR+LFQMARSKKACI+FFDEVDAIGGARFDDG GGDNEVQRTMLE++NQLDGFD RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE R  IF IH +TM+C RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRK V+EKDFL+A++KVIK Y
Sbjct:  248 GARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDKVIKSY 415          

HSP 2 Score: 23.0978 bits (48), Expect = 9.813e-83
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = -3
Query:  231 SKFSATPKYMVYN 269
            +KFSAT +YM YN
Sbjct:  416 AKFSATSRYMHYN 428          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 300.442 bits (768), Expect = 2.178e-82
Identity = 144/168 (85.71%), Postives = 157/168 (93.45%), Query Frame = -1
Query:  269 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 772
            GARMVRELF+MAR+KKAC++FFDE+DAIGGARFDDG GGDNEVQRTMLE++NQLDGFD RGNIKVLMATNRPDTLDPAL+RPGRLDRK+EF LPDLE RT I KIH R+M+ ERDIRFELLARLCPNSTGA+IRSVCTEAGMFAIRARRK  TEKDFL+AVNKVIK Y
Sbjct:  253 GARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSY 420          

HSP 2 Score: 27.335 bits (59), Expect = 2.178e-82
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = -3
Query:  231 SKFSATPKYMVYN 269
            +KFSATP+YM YN
Sbjct:  421 AKFSATPRYMTYN 433          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 5.771e-80
Identity = 138/168 (82.14%), Postives = 155/168 (92.26%), Query Frame = -1
Query:  269 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 772
            GARMVRELF+MAR+KKAC++FFDE+DA+GGARFDDG GGDNEVQRTMLE++NQLDGFD RGNIKVLMATNRPDTLDPAL+RPGRLDRKVEF LPDL  R  I KIH + M+ ERDIR++LLARLCPNSTGA+IRSVCTEAGMFAIRARRK  TEKDFL+A+NKV+KGY
Sbjct:  255 GARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKVVKGY 422          

HSP 2 Score: 26.5646 bits (57), Expect = 5.771e-80
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = -3
Query:  231 QGISKFSATPKYMVYN 278
            +G +KFSATP+Y+ +N
Sbjct:  420 KGYAKFSATPRYLTHN 435          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 2.838e-76
Identity = 133/169 (78.70%), Postives = 155/169 (91.72%), Query Frame = -1
Query:  266 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQ 772
            GARMVRELF+MAR+KKACI+FFDE+DA+GGARFDDG GGDNEVQRTMLE++ QLDGFD RGNIKV+ ATNRP+TLDPALLRPGR+DRKVEF LPDLE R  IF+IH+++M+ ER IR+EL++RLCPNSTGA++RSVCTEAGMFAIRARRK  TEKDFL AV+KVI GY+
Sbjct:  287 GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 455          

HSP 2 Score: 23.8682 bits (50), Expect = 2.838e-76
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = -3
Query:  231 GISKFSATPKYMVYN 275
            G  KFS+T +YM YN
Sbjct:  453 GYKKFSSTSRYMQYN 467          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 3.697e-74
Identity = 131/169 (77.51%), Postives = 152/169 (89.94%), Query Frame = -1
Query:  266 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQ 772
            GARMVRELF+MAR+KKACI+FFDE+DAIGGARFDDG GGDNEVQRTMLE++ QLDGFD RGNIKVL ATNRP+TLD AL+RPGR+DRKVEFGLPDLE R  I +IH ++M  ++DIR+EL+ARLCP+ TGA++RSVCTEAGMFAIRARR+  TEKDFLDAV KV+KG Q
Sbjct:  257 GARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQKVVKGNQ 425          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 8.014e-53
Identity = 97/163 (59.51%), Postives = 126/163 (77.30%), Query Frame = -1
Query:  281 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 769
            ARM+RE+F  AR  + CIVF DE+DAIGG RF +G   D E+QRT++E++NQLDGFD+ G +KV+MATNRPDTLDPALLRPGRLDRK+E GLP+ +SR +I KIH+  +    +I FE + +L    + AD+R+VCTEAGMFAIRA R+ V ++DF+ AV KV
Sbjct:  229 ARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 391          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.367e-51
Identity = 101/179 (56.42%), Postives = 132/179 (73.74%), Query Frame = -1
Query:  239 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI-KGYQSSVQRLNIW 772
            G+RMVRELF MAR     I+F DE+D+IG +R + G GGD+EVQRTMLE++NQLDGF+A  NIKV+MATNR D LDPALLRPGR+DRK+EF  P+ E+R  I KIH+R MN  R I    +A L P ++GA+++ VCTEAGM+A+R RR  VT++DF  AV KV+ K  + ++    +W
Sbjct:  223 GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 401          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.367e-51
Identity = 101/179 (56.42%), Postives = 132/179 (73.74%), Query Frame = -1
Query:  239 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI-KGYQSSVQRLNIW 772
            G+RMVRELF MAR     I+F DE+D+IG +R + G GGD+EVQRTMLE++NQLDGF+A  NIKV+MATNR D LDPALLRPGR+DRK+EF  P+ E+R  I KIH+R MN  R I    +A L P ++GA+++ VCTEAGM+A+R RR  VT++DF  AV KV+ K  + ++    +W
Sbjct:  226 GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 404          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.671e-50
Identity = 101/179 (56.42%), Postives = 131/179 (73.18%), Query Frame = -1
Query:  239 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI-KGYQSSVQRLNIW 772
            GARMVRELF MAR     I+F DE+D+IG +R + G GGD+EVQRTMLE++NQLDGF+A  NIKV+MATNR D LD ALLRPGR+DRK+EF  P+ E+R  I KIH+R MN  R I    +A L P ++GA+++ VCTEAGM+A+R RR  VT++DF  AV KV+ K  + ++    +W
Sbjct:  227 GARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLW 405          
The following BLAST results are available for this feature:
BLAST of CN184994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 337
Match NameE-valueIdentityDescription
PRS7_BOVIN4.421e-8386.3126S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS7_DICDI9.813e-8388.1026S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS7_PONAB2.178e-8285.7126S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PRS7_CAEEL5.771e-8082.1426S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS7_YEAST2.838e-7678.7026S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS7_SCHPO3.697e-7477.5126S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS10_CAEEL8.014e-5359.51Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS8_MANSE3.367e-5156.4226S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS8_DROME3.367e-5156.4226S protease regulatory subunit 8 OS=Drosophila me... [more]
PRS8_RAT1.671e-5056.4226S protease regulatory subunit 8 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184994 ID=CN184994; Name=CN184994; organism=Citrus sinensis; type=EST; length=772bp
GAGGATTTAATTGAATGTTCTAACAGACATTGGAAAATCCACGTAATTAT
GAAATCATACAAAATGGTTCTTGAGAGGGCAAATGTTACACAAACACAGC
AAGTTTAAACAACAGAGAATCAAATTGATGGGACAGCCTCTCAAAGGAAC
TTCATGATCTTGGATAACCCTCTGAGAAGGTGGAACAATTGCGTCCAAGC
ATCTCTCCAGAAAGAAAAACATCGGAATCAATTGTAGACCATATATTTAG
GCGTTGCACTGAACTTTGATATCCCTTGATGACTTTGTTCACTGCATCGA
GGAAGTCTTTCTCTGTCACTGTTTTTCTTCGTGCCCGGATGGCAAACATC
CCAGCTTCTGTGCATACACTCCTTATATCAGCTCCTGTGGAATTGGGGCA
AAGCCTAGCCAAGAGCTCAAAGCGGATATCTCTTTCACAGTTCATTGTTC
GCGTGTGGATCTTAAATATCTGTGTCCGGCTCTCCAAATCAGGAAGGCCA
AACTCAACCTTACGATCTAATCGTCCGGGACGCAACAGGGCCGGATCAAG
TGTGTCAGGCCTGTTTGTTGCCATTAGAACTTTGATATTTCCACGAGCAT
CAAACCCATCAAGCTGATTCACAATTTCAAGCATTGTGCGTTGAACCTCG
TTGTCCCCGCCAACACCATCATCAAAACGTGCACCTCCTATAGCATCAAC
TTCATCAAAGAAGACAATACAAGCCTTCTTTGAACGTGCCATCTGAAATA
GTTCGCGAACCATACGAGCTCC
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