CN184994

Overview
NameCN184994
Unique NameCN184994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.848e-20
Identity = 60/158 (37.97%), Postives = 93/158 (58.86%), Query Frame = -1
Query:  308 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNE--VQRTMLEIVNQLDGF---DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIHTRTMNCERDIRFELLARLCP-NSTGADIRSVCTEAGMFAIRARRKTVTEK 760
            VR++FQ AR  K C+VFFDE+D++   R   G  GD+E  + R + +++ +LDG    D    + V+ ATNRPD LD ALLRPGR D+ +  G+ D  E +++I +  +R  +    +  + +A  CP   TGAD  ++C++A + A+     TV EK
Sbjct:  900 VRKVFQRARDAKPCVVFFDELDSVAPKR---GNQGDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAMTRIANTVDEK 1054          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.848e-20
Identity = 53/144 (36.81%), Postives = 87/144 (60.42%), Query Frame = -1
Query:  329 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR 760
            VR++F  A++ K CI+FFDE ++I   R  D  G      R + +++ QLDG +    + VL AT+RPD +DPALLRPGRLD+ V    PD  SR +I  + ++++    D+  + +A +  + TGAD++++   A + A++ R
Sbjct:  923 VRDVFIRAQAAKPCILFFDEFESIAPRRGHDNTG---VTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLALADDVDLQHVASVTDSFTGADLKALLYNAQLEALQGR 1063          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.944e-20
Identity = 55/138 (39.86%), Postives = 82/138 (59.42%), Query Frame = -1
Query:  368 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDN-EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRF--ELLARLCPNSTGADIRS 772
            GA  VR LF+ AR++  CIV+ DE+DA+G  R     G  N E ++T+ +++ ++DG     ++ VL +TNR D LD AL+RPGRLDR V   LP L+ R +IF+ H + +   +   F  + LA L P  +G   +S
Sbjct:  386 GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGTAKKS 523          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: RIX7_YEAST (Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae GN=RIX7 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 55/150 (36.67%), Postives = 87/150 (58.00%), Query Frame = -1
Query:  329 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN--CERDIRFELLAR--LCPNSTGADIRSVCTEAGMFAIRAR 766
            R +R++F  AR+   C++FFDE+DA+   R        + V  T+L    +LDG + R  I V+ ATNRPD +DPA+LRPGRLD+ +   LP+ E +  I K  T++       D+ FE + R   C N +GAD+ ++  E+ + A++ +
Sbjct:  613 RSIRQVFTRARASVPCVIFFDELDALVPRRDTSLSESSSRVVNTLL---TELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALKRK 759          

HSP 2 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 56/149 (37.58%), Postives = 86/149 (57.72%), Query Frame = -1
Query:  335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGN----IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 766
            + +R+LF  ARS   C+VFFDE+DAI   R  DG G   E++R ++ +++  +D           + ++ ATNRPD+LD AL R GR DR++   +P+  SR  I K  +  +  +  I F  LA+L P   GAD++++ T AG  AI+
Sbjct:  285 KKIRDLFDEARSLAPCLVFFDEIDAITPKR--DG-GAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLKIDGAIDFAKLAKLTPGFVGADLKALVTAAGTCAIK 430          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX6_HUMAN (Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = -1
Query:  329 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL-PDLESRTQIFKIHTRTMNCERDIRFELLARLC-PNSTGADIRSVCTEAGMFAIRAR 760
            VRE+F  AR+   CI+FFDE+D++  +R   G  G   + R + +++ +LDG  +  ++ V+ ATNRPD LDPALLRPGR D+ V  G   D  S+ ++    TR    E  +    +   C P  TGAD+ S+C++A   A++ R
Sbjct:  785 VREVFARARAAAPCIIFFDELDSLAPSRGRSGDSG-GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADLYSLCSDAMTAALKRR 929          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.168e-19
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  308 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG---DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIHTRTMNCERDIRFELLARLCP-NSTGADIRSVCTEAGMFAIRARRKTVTEK 760
            VR +FQ AR  + C+VFFDE+D++   R + G  G   D  V + + E+     G D  G + V+ ATNRPD LDPALLRPGR D+ +  G+ D  + + +I +  TR       +    +A+  P   TGAD  ++C++A + A+  +  +V  K
Sbjct: 1075 VRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGDDTSGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQLKILEALTRKFTLHPSVSLHSVAQQLPFTYTGADFYALCSDAMLKAVTRQAASVDAK 1230          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: YHI5_SCHPO (Uncharacterized AAA domain-containing protein P22H7.05c OS=Schizosaccharomyces pombe GN=SPBP22H7.05c PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.992e-19
Identity = 55/145 (37.93%), Postives = 86/145 (59.31%), Query Frame = -1
Query:  335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFEL-LARLCPNSTGADIRSVCTEAGMFAIR 766
            R +R LF+ AR  +  I+FFDE+D +   R        + +  T+L +   +DG D RG + V+ ATNRP+ LDPAL RPGR DR+  F LP+ ++R +I +I++   + +    + L LA       GAD++++CTEA + A+R
Sbjct:  457 RQLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQEQTHSSIVSTLLAL---MDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKILEINSLHFSPKIPESYLLHLAESTSGYGGADLKALCTEAALNAVR 598          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.602e-19
Identity = 61/181 (33.70%), Postives = 94/181 (51.93%), Query Frame = -1
Query:  245 IVFFDEVDAI---GGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRK---------------TVTEKDFLDAVNKVIKGYQSSVQRLN 718
            ++ FDE+D++    G+   DG G GDN V     ++++++DG D   NI V+  TNR D +D ALLRPGR + ++E  LPD + R  IF IHT+ +        D+ F+ L+ L  N TGA+I  +C  A  +AI    K                +T  DFL A+N +   + +  + L+
Sbjct:  381 VIIFDELDSVFKQRGSGKSDGTGVGDNVVN----QLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKGRKDIFLIHTKKLTENGILSSDVNFDELSTLTKNFTGAEIEGLCNSAKSYAISRHTKKGALAQIDPESIAKMKITRDDFLLALNDIRPAFGTDEEDLS 557          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.602e-19
Identity = 51/146 (34.93%), Postives = 85/146 (58.22%), Query Frame = -1
Query:  329 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL-PDLESRTQIFKIHTRTMNCERDIRFELLARLCP-NSTGADIRSVCTEAGMFAIRAR 760
            +RE+F  AR  K C++FFDE+D++  +R  +G      + R + +++ +LDG     ++ ++ ATNRPD LD +L+RPGRLDR +  G+  + E++ +I +  TR  N   D+    +   CP N TGAD  ++ ++A   A   R
Sbjct: 1000 IREIFNKARQAKPCVIFFDELDSLAPSR-GNGADSGGVMDRVVSQLLAELDGMQKSSDVFIIGATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENCPMNLTGADFYALASDAMSNAFHER 1144          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.399e-19
Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = -1
Query:  308 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA----RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIHTRTMNCERDIRFELLARLCP-NSTGADIRSVCTEAGMFAIRARRKTVTEK 760
            VR +FQ AR  + C+VFFDE+D++   R + G  G   + R + +++ +LDG +      G + V+ ATNRPD LD ALLRPGR D+ +  G+ D    +  I +  TR      D+  + +A   P   TGAD+ ++C++A + AI  +   V EK
Sbjct: 1111 VRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSG-GVMDRIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVAEQLPLTYTGADLYALCSDAMLKAITRKATAVDEK 1266          
The following BLAST results are available for this feature:
BLAST of CN184994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 337
Match NameE-valueIdentityDescription
PEX6_PICPA6.848e-2037.97Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
PEX1_MOUSE6.848e-2036.81Peroxisome biogenesis factor 1 OS=Mus musculus GN=... [more]
SPG7_RAT8.944e-2039.86Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
RIX7_YEAST1.168e-1936.67Ribosome biogenesis ATPase RIX7 OS=Saccharomyces c... [more]
PEX6_HUMAN1.168e-1938.36Peroxisome assembly factor 2 OS=Homo sapiens GN=PE... [more]
PEX6_GLOLA1.168e-1935.90Peroxisomal biogenesis factor 6 OS=Glomerella lage... [more]
YHI5_SCHPO1.992e-1937.93Uncharacterized AAA domain-containing protein P22H... [more]
SEC18_CANAL2.602e-1933.70Vesicular-fusion protein SEC18 OS=Candida albicans... [more]
PEX6_DICDI2.602e-1934.93Peroxisomal biogenesis factor 6 OS=Dictyostelium d... [more]
PEX6_PENCH3.399e-1936.31Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184994 ID=CN184994; Name=CN184994; organism=Citrus sinensis; type=EST; length=772bp
GAGGATTTAATTGAATGTTCTAACAGACATTGGAAAATCCACGTAATTAT
GAAATCATACAAAATGGTTCTTGAGAGGGCAAATGTTACACAAACACAGC
AAGTTTAAACAACAGAGAATCAAATTGATGGGACAGCCTCTCAAAGGAAC
TTCATGATCTTGGATAACCCTCTGAGAAGGTGGAACAATTGCGTCCAAGC
ATCTCTCCAGAAAGAAAAACATCGGAATCAATTGTAGACCATATATTTAG
GCGTTGCACTGAACTTTGATATCCCTTGATGACTTTGTTCACTGCATCGA
GGAAGTCTTTCTCTGTCACTGTTTTTCTTCGTGCCCGGATGGCAAACATC
CCAGCTTCTGTGCATACACTCCTTATATCAGCTCCTGTGGAATTGGGGCA
AAGCCTAGCCAAGAGCTCAAAGCGGATATCTCTTTCACAGTTCATTGTTC
GCGTGTGGATCTTAAATATCTGTGTCCGGCTCTCCAAATCAGGAAGGCCA
AACTCAACCTTACGATCTAATCGTCCGGGACGCAACAGGGCCGGATCAAG
TGTGTCAGGCCTGTTTGTTGCCATTAGAACTTTGATATTTCCACGAGCAT
CAAACCCATCAAGCTGATTCACAATTTCAAGCATTGTGCGTTGAACCTCG
TTGTCCCCGCCAACACCATCATCAAAACGTGCACCTCCTATAGCATCAAC
TTCATCAAAGAAGACAATACAAGCCTTCTTTGAACGTGCCATCTGAAATA
GTTCGCGAACCATACGAGCTCC
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