CN184994

Overview
NameCN184994
Unique NameCN184994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.399e-19
Identity = 54/141 (38.30%), Postives = 76/141 (53.90%), Query Frame = -1
Query:  338 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAI 760
            VR++F  A S K C++FFDE D+I   R  D  G      R + + + QLDG +    + VL AT+RPD +DPALLRPGRLD+ +   +P+   R  I       MN    I  E L+      TGAD+R++   A + +I
Sbjct:  948 VRDVFSRASSAKPCVLFFDEFDSIAPRRGHDNSG---VTDRVVNQFLTQLDGVEGLTGVYVLAATSRPDLIDPALLRPGRLDKSLYCNIPEFNERLDILTCLKSKMNLSPSISLEQLSTNTQYYTGADLRALMYNAQLKSI 1085          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.797e-19
Identity = 51/149 (34.23%), Postives = 82/149 (55.03%), Query Frame = -1
Query:  314 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 760
            VR+LF  A+  K C++FFDE D++   R  D  G      R + +I+ Q+DG ++   + ++ AT RPD +DPALLRPGRLD+ +   LP+ E R ++ +      + E     + L+ L    T AD+ S+  +A + A+    K V+
Sbjct:  688 VRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTG---VTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHKLLKRVS 833          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.797e-19
Identity = 52/141 (36.88%), Postives = 84/141 (59.57%), Query Frame = -1
Query:  338 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAI 760
            VR++F  A++ K CI+FFDE ++I   R  D  G      R + +++ QLDG +    + VL AT+RPD +DPALLRPGRLD+ V    PD  SR +I  + + ++    D+  + +A +  + TGAD++++   A + A+
Sbjct:  922 VRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTG---VTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEAL 1059          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.888e-19
Identity = 66/179 (36.87%), Postives = 89/179 (49.72%), Query Frame = -1
Query:  248 IVFFDEVDAI----GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKT--------------VTEKDFLDAVNKVIKGYQSSVQRL 718
            I+ FDE+DAI    G +  D GVG      + + +++ ++DG D   NI V+  TNR D +D ALLRPGRL+  +E  LPD   R QI KIHT  M      E D+  E LA L  N +GA+I  +   A  FA     K               V   DFL+A+++V   Y  S + L
Sbjct:  375 IIIFDELDAICKKRGSSGGDTGVG-----DQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFAFYRHIKVGTTAAVSGNLENIKVNRNDFLNALSEVRPAYGVSEEEL 548          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18
Identity = 57/156 (36.54%), Postives = 88/156 (56.41%), Query Frame = -1
Query:  308 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGN--IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIHTRTMNCERDIRFELLARLCP-NSTGADIRSVCTEAGMFAIRARRKTVTEK 760
            VR +FQ AR  K C++FFDE+D++   R + G  G   + R + +++ +LDG   A G   + V+ ATNRPD LD ALLRPGR D+ +  G+ D  E + +I +  TR    +  +    +A  CP   TGAD  ++C++A + A+      V +K
Sbjct:  894 VRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSG-GVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAMTRTAGAVEKK 1048          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.687e-18
Identity = 56/168 (33.33%), Postives = 90/168 (53.57%), Query Frame = -1
Query:  272 GARMVRELFQMARSKKACIVFFDEVDAIGGAR-FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 772
            GA  +R+LF  A+    C+VF DE+D++GG R F       N+   T+ +++ ++DGF ++  I VL ATN+ + LD ALLRPGR D ++    P  E R  +  ++ + +    +I  E LA      TGADI+++  +A + A       V      DA +++I G
Sbjct:  243 GASRIRQLFTTAKQNSPCLVFIDEIDSVGGNRTFSPHHPFANQ---TINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAAALRNDPFVEMHHLWDARDRLIMG 407          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.758e-18
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = -1
Query:  308 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG---DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIHTRTMNCERDIRFELLARLCP-NSTGADIRSVCTEAGMFAIRARRKTVTEK 760
            VR +FQ AR  + C+VFFDE+D++   R + G  G   D  V + + E+     G    G + V+ ATNRPD LDPALLRPGR D+ +  G+ D  + +  I +  TR       +    +A   P   TGAD  ++C++A + A+  +   V  K
Sbjct: 1072 VRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVAERLPFTYTGADFYALCSDAMLKAVTRQATLVDTK 1227          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SEC18_YEAST (Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae GN=SEC18 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.371e-18
Identity = 64/180 (35.56%), Postives = 90/180 (50.00%), Query Frame = -1
Query:  248 IVFFDEVDAI---GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR----------------ARRKTVTEKDFLDAVNKVIKGYQSSVQRL 718
            I+ FDE+D++    G+R D    GDN V     +++ ++DG D   NI V+  TNR D +D ALLRPGR + +VE  LPD + R QIF I T+ M        D+    LA L  N +GA+I  +   A  FAI                   +  VT +DFL+A+N V   +  S + L
Sbjct:  345 IIIFDELDSVFKQRGSRGDGTGVGDNVVN----QLLAKMDGVDQLNNILVIGMTNRKDLIDSALLRPGRFEVQVEIHLPDEKGRLQIFDIQTKKMRENNMMSDDVNLAELAALTKNFSGAEIEGLVKSASSFAINKTVNIGKGATKLNTKDIAKLKVTREDFLNALNDVTPAFGISEEDL 520          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.181e-17
Identity = 50/145 (34.48%), Postives = 78/145 (53.79%), Query Frame = -1
Query:  353 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN---------CERDIRFELLARLCPNSTGADIRSVCTEA 760
            +RELF+ A+S K CI+FFDE D+I   R  D  G      R + +++ Q+DG +    + +L AT+RPD +D ALLRPGRLD+ V   +P    R  I +    + +          E++   +L+A      +GAD++ +C  A
Sbjct:  779 IRELFERAQSVKPCILFFDEFDSIAPKRGHDSTG---VTDRVVNQLLTQMDGAEGLDGVYILAATSRPDLIDSALLRPGRLDKSVICNIPTESERLDILQAIVNSKDKDTGQKKFALEKNADLKLIAEKTAGFSGADLQGLCYNA 920          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.181e-17
Identity = 62/175 (35.43%), Postives = 88/175 (50.29%), Query Frame = -1
Query:  260 IVFFDEVDAI----GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKT--------------VTEKDFLDAVNKVIKGYQSS 718
            I+ FDE+DAI    G  + D GVG D+ V     +++  +DG ++  NI V+  TNR D +D ALLRPGRL+  VE  LPD   R QIFKIHT  M      ++D+     A    N +GA+I  V   A  +A   +  T              V ++DF  A+ +V   + S+
Sbjct:  328 IIIFDELDAICKSRGSRQGDSGVG-DSVVN----QLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYAFSRQVDTKNIKNVEIKPEDIKVCDQDFKRAITEVTPSFGST 497          
The following BLAST results are available for this feature:
BLAST of CN184994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 337
Match NameE-valueIdentityDescription
PEX1_DICDI3.399e-1938.30Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]
PEX1_SCHPO5.797e-1934.23Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
PEX1_HUMAN5.797e-1936.88Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
SEC18_SCHPO9.888e-1936.87Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
PEX6_PICAN1.291e-1836.54Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
YME1_SCHMA1.687e-1833.33Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
PEX6_NEUCR3.758e-1835.26Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
SEC18_YEAST8.371e-1835.56Vesicular-fusion protein SEC18 OS=Saccharomyces ce... [more]
PEX1_YEAST3.181e-1734.48Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
NSF_DICDI3.181e-1735.43Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184994 ID=CN184994; Name=CN184994; organism=Citrus sinensis; type=EST; length=772bp
GAGGATTTAATTGAATGTTCTAACAGACATTGGAAAATCCACGTAATTAT
GAAATCATACAAAATGGTTCTTGAGAGGGCAAATGTTACACAAACACAGC
AAGTTTAAACAACAGAGAATCAAATTGATGGGACAGCCTCTCAAAGGAAC
TTCATGATCTTGGATAACCCTCTGAGAAGGTGGAACAATTGCGTCCAAGC
ATCTCTCCAGAAAGAAAAACATCGGAATCAATTGTAGACCATATATTTAG
GCGTTGCACTGAACTTTGATATCCCTTGATGACTTTGTTCACTGCATCGA
GGAAGTCTTTCTCTGTCACTGTTTTTCTTCGTGCCCGGATGGCAAACATC
CCAGCTTCTGTGCATACACTCCTTATATCAGCTCCTGTGGAATTGGGGCA
AAGCCTAGCCAAGAGCTCAAAGCGGATATCTCTTTCACAGTTCATTGTTC
GCGTGTGGATCTTAAATATCTGTGTCCGGCTCTCCAAATCAGGAAGGCCA
AACTCAACCTTACGATCTAATCGTCCGGGACGCAACAGGGCCGGATCAAG
TGTGTCAGGCCTGTTTGTTGCCATTAGAACTTTGATATTTCCACGAGCAT
CAAACCCATCAAGCTGATTCACAATTTCAAGCATTGTGCGTTGAACCTCG
TTGTCCCCGCCAACACCATCATCAAAACGTGCACCTCCTATAGCATCAAC
TTCATCAAAGAAGACAATACAAGCCTTCTTTGAACGTGCCATCTGAAATA
GTTCGCGAACCATACGAGCTCC
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