CN184994

Overview
NameCN184994
Unique NameCN184994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.280e-15
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = -1
Query:  329 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--------ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR 766
            RMVR LF +AR+     +F DE+D++  +R   G G     +R   E++ Q+DG          +R  + VL ATN P  +D AL R  RL++++   LPD ESR  +  I+ RT+    D+  E +AR     +G D+ +VC +A M  +R +
Sbjct:  318 RMVRCLFDLARAYAPSTIFIDEIDSLCNSR--GGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRK 467          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 60/189 (31.75%), Postives = 96/189 (50.79%), Query Frame = -1
Query:  275 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGF-------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-----------------RKTVTEKDFLDAVNKVIK 766
            ++VR LF+MAR      +F DE+D+I   R   G G ++E  R +  E++ Q+DG        ++   + VL ATN P  +D AL R  RL++++   LP+++ R Q+ +I+ + +    DI  + +A      +GADI +VC +A M A+R R                  +  T  DFL A+ KV K
Sbjct:  313 KLVRLLFEMARFYAPSTIFIDEIDSICSKR---GTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDASMMAMRRRIQGLRPEEIRHIPKEELNQPSTPADFLLALQKVSK 496          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 61/194 (31.44%), Postives = 95/194 (48.97%), Query Frame = -1
Query:  260 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGF-------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-----------------RKTVTEKDFLDAVNKVIKGYQSS 766
            ++VR LF+MAR      +F DE+D+I   R   G   ++E  R +  E++ Q+DG        D    + VL ATN P  +D AL R  RL++++   LP  + R ++ KI  R +  + DIR E +A      +GADI +VC +A + A+R R                 +  VT  DF  A+ K+ K   ++
Sbjct:  287 KLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQMPVTRGDFELALKKIAKSVSAA 475          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 61/202 (30.20%), Postives = 100/202 (49.50%), Query Frame = -1
Query:  239 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGF-------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-----------------RKTVTEKDFLDAVNKVIKGYQSS-VQRLNIW 766
            ++VR LF+MAR      +F DE+D+I G R   G   ++E  R +  E++ Q+DG        D    + VL ATN P  +D AL R  RL++++   LP  + R ++ KI+ R ++   D+   + A      +GADI +VC +A M A+R R                 +  VT +DF  A+ K+ K   ++ +++   W
Sbjct:  285 KLVRLLFEMARFYAPTTIFIDEIDSICGRR---GTSDEHEASRRVKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEEIRALSKDELQMPVTMEDFELALKKISKSVSAADLEKYESW 481          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = -1
Query:  260 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGF-------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-----------------RKTVTEKDFLDAVNKVIKGYQSS 766
            ++VR LF+MAR      +F DE+D+I   R   G   ++E  R +  E++ Q+DG        D    + VL ATN P  +D AL R  RL++++   LP  + R ++ KI+ R +  + DI+ E +A      +GADI +VC +A + A+R R                 +  VT+ DF  A+ K+ K   ++
Sbjct:  287 KLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLGPEEIRALSKEELQMPVTKGDFELALKKIAKSVSAA 475          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = -1
Query:  260 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGF-------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-----------------RKTVTEKDFLDAVNKVIKGYQSS 766
            ++VR LF+MAR      +F DE+D+I   R   G   ++E  R +  E++ Q+DG        D    + VL ATN P  +D AL R  RL++++   LP  + R ++ KI+ R +  + DI+ E +A      +GADI +VC +A + A+R R                 +  VT+ DF  A+ K+ K   ++
Sbjct:  287 KLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQMPVTKGDFELALKKIAKSVSAA 475          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = -1
Query:  260 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGF-------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-----------------RKTVTEKDFLDAVNKVIKGYQSS 766
            ++VR LF+MAR      +F DE+D+I   R   G   ++E  R +  E++ Q+DG        D    + VL ATN P  +D AL R  RL++++   LP  + R ++ KI+ R +  + DI+ E +A      +GADI +VC +A + A+R R                 +  VT+ DF  A+ K+ K   ++
Sbjct:  287 KLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQMPVTKGDFELALKKIAKSVSAA 475          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 52/175 (29.71%), Postives = 88/175 (50.29%), Query Frame = -1
Query:  248 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMF-AIRARRKTVTEKDFLDAVNKVIKGYQSSVQRL 769
            ++M+REL+Q A     CIVF DE+DAIG +R    + GD  V   +  ++ +LDG      +  + ATN P  LDPA+    R + ++EF LP+ E R +I +++ + M        +         +G DI+    +  +  AI   R  V+++D   A+ K++   + + Q L
Sbjct:  199 SKMIRELYQRASESAPCIVFIDELDAIGLSREYQSLRGD--VSEVVNALLTELDGIKENEGVVTIAATNNPAMLDPAI--RSRFEEEIEFKLPNDEERLKIMELYAKKMPLPVKANLKEFVEKTKGFSGRDIKEKFLKPALHRAILEDRDYVSKEDLEWALKKILGNRREAPQHL 369          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 60/177 (33.90%), Postives = 91/177 (51.41%), Query Frame = -1
Query:  248 IVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCERDIRFELLARLCPNSTGADIRSVCTEAGMFA----IRARRKT-----------VTEKDFLDAVNKVIKGYQSSVQRL 718
            I+ FDE+DAI  AR    V G++ V  T++ +++ ++DG +   NI V+  TNR D +D ALLRPGRL+ ++E  LP+ + R QI  IHT+ M        D+    +A    N +GA++  +   A   A    I+A  K            VT  DFL A++  IK    + Q +
Sbjct:  329 IIIFDEIDAICKAR--GSVAGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNRLIKADSKVHVDPEAMEKLRVTRADFLHALDNDIKPAFGAAQEM 503          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 51/161 (31.68%), Postives = 87/161 (54.04%), Query Frame = -1
Query:  305 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGF------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 766
            ++VR LF+MAR      +F DE+D+I   R   G   ++E  R +  E++ Q+DG       D    + VL ATN P  +D AL R  RL++++   LP  + R  + KI+ + ++   D+  + +A      +GADI +VC +A + A+R R + +T ++
Sbjct:  283 KLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRRRIEGLTPEE 438          
The following BLAST results are available for this feature:
BLAST of CN184994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 337
Match NameE-valueIdentityDescription
KTNA1_ARATH2.280e-1534.42Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
KTNA1_STRPU2.977e-1531.75Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
KATL1_RABIT2.977e-1531.44Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_DANRE2.977e-1530.20Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_PAPAN3.888e-1530.93Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA3.888e-1530.93Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN3.888e-1530.93Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PRS2_METJA8.663e-1529.71Putative 26S protease regulatory subunit homolog M... [more]
NSF2_DROME8.663e-1533.90Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
KTNA1_DANRE8.663e-1531.68Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184994 ID=CN184994; Name=CN184994; organism=Citrus sinensis; type=EST; length=772bp
GAGGATTTAATTGAATGTTCTAACAGACATTGGAAAATCCACGTAATTAT
GAAATCATACAAAATGGTTCTTGAGAGGGCAAATGTTACACAAACACAGC
AAGTTTAAACAACAGAGAATCAAATTGATGGGACAGCCTCTCAAAGGAAC
TTCATGATCTTGGATAACCCTCTGAGAAGGTGGAACAATTGCGTCCAAGC
ATCTCTCCAGAAAGAAAAACATCGGAATCAATTGTAGACCATATATTTAG
GCGTTGCACTGAACTTTGATATCCCTTGATGACTTTGTTCACTGCATCGA
GGAAGTCTTTCTCTGTCACTGTTTTTCTTCGTGCCCGGATGGCAAACATC
CCAGCTTCTGTGCATACACTCCTTATATCAGCTCCTGTGGAATTGGGGCA
AAGCCTAGCCAAGAGCTCAAAGCGGATATCTCTTTCACAGTTCATTGTTC
GCGTGTGGATCTTAAATATCTGTGTCCGGCTCTCCAAATCAGGAAGGCCA
AACTCAACCTTACGATCTAATCGTCCGGGACGCAACAGGGCCGGATCAAG
TGTGTCAGGCCTGTTTGTTGCCATTAGAACTTTGATATTTCCACGAGCAT
CAAACCCATCAAGCTGATTCACAATTTCAAGCATTGTGCGTTGAACCTCG
TTGTCCCCGCCAACACCATCATCAAAACGTGCACCTCCTATAGCATCAAC
TTCATCAAAGAAGACAATACAAGCCTTCTTTGAACGTGCCATCTGAAATA
GTTCGCGAACCATACGAGCTCC
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