CN184994

Overview
NameCN184994
Unique NameCN184994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = -1
Query:  464 RMVRELFQMARSKKA----CIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF 766
            R +R +FQ AR K +     IVFFDE+D+I   R   G G  ++V+ T++ ++++++DG +   N+ V+ A+NR D +DPA+LRPGRLD K++   PD E+   I+
Sbjct:  347 RHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR---GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIY 449          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = -1
Query:  464 RMVRELFQMARSKKA----CIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF 766
            R +R +FQ AR K +     IVFFDE+D+I   R   G G  ++V+ T++ ++++++DG +   N+ V+ A+NR D +DPA+LRPGRLD K++   PD E+   I+
Sbjct:  347 RHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR---GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIY 449          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = -1
Query:  464 RMVRELFQMARSKKA----CIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF 766
            R +R +FQ AR K +     IVFFDE+D+I   R   G G  ++V+ T++ ++++++DG +   N+ V+ A+NR D +DPA+LRPGRLD K++   PD E+   I+
Sbjct:  347 RHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR---GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIY 449          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = -1
Query:  305 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGF-------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 766
            ++VR LF+MAR      +F DE+D+I   R   G   ++E  R +  E++ Q+DG        D    + VL ATN P  +D AL R  RL++++   LP  + R ++ +I  R +    D+    +A      +GADI +VC +A + A+R R + +T ++
Sbjct:  288 KLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEE 444          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = -1
Query:  305 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGF-------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 766
            ++VR LF+MAR      +F DE+D+I   R   G   ++E  R +  E++ Q+DG        D    + VL ATN P  +D AL R  RL++++   LP  + R ++ +I  R +    D+    +A      +GADI +VC +A + A+R R + +T ++
Sbjct:  288 KLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEE 444          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 51/162 (31.48%), Postives = 86/162 (53.09%), Query Frame = -1
Query:  305 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGF-------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 766
            ++VR LF+MAR      +F DE+D+I   R   G   ++E  R +  E++ Q+DG        D    + VL ATN P  +D AL R  RL++++   LP  + R ++ +I+ R +    D+    +A      +GADI +VC +A + A+R R + +T ++
Sbjct:  289 KLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDASLMAMRRRIEGLTPEE 445          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 54/151 (35.76%), Postives = 79/151 (52.32%), Query Frame = -1
Query:  335 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN--IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI---RFELLARLCPNSTGADIRSVCTEAGMFAIR 772
            G ++VR LF +AR K   ++F DE+D++  +R +         +R   E + QLDG +   +  + VL ATNRP  LD A  R  R  +++   LP+ ESRTQI  +    +    DI     E +  L    +GAD+R +CTEA M  IR
Sbjct:  393 GEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSE---SEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPESRTQI--VQNLLVGTRHDITNHNLERIRELTDGYSGADMRQLCTEAAMGPIR 536          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.251e-13
Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = -1
Query:  305 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC---ERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 766
            ++V++LF MAR  K  I+F DEVDA+ G R   G G     +R   E++ Q++G   D++G + VL ATN P  LD A+ R  R +R++   LPDL +RT +F+I+     C   + D R   L  +    +G+DI  V  +A M  IR  +     KD
Sbjct:  212 KLVKQLFAMARENKPSIIFIDEVDALTGTR---GEGESEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYR--TLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 362          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.634e-13
Identity = 49/162 (30.25%), Postives = 86/162 (53.09%), Query Frame = -1
Query:  305 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGF-------DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 766
            ++VR LF+MAR      +F DE+D++   R   G   ++E  R +  E++ Q+DG        D    + VL ATN P  +D AL R  RL++++   LP  + R ++ +I+ + +    D+    +A      +GADI +VC +A + A+R R + +T ++
Sbjct:  283 KLVRILFEMARFYAPTTIFIDEIDSMCSRR---GTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDASLMAMRRRIEGLTPEE 439          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 50/159 (31.45%), Postives = 87/159 (54.72%), Query Frame = -1
Query:  296 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIR-FELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 766
            R+VR+LF+MAR +K  I+F DE+D++ G+R +   G     +R   E + Q++G       + VL ATN P TLD A+ R  R ++++   LP+  +R ++F+++   +  E   + F+ LA++    +G+DI  V  +A M  +R        K+  D
Sbjct:  208 RLVRQLFEMAREQKPSIIFIDEIDSLCGSRSE---GESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHFKEVYD 361          
The following BLAST results are available for this feature:
BLAST of CN184994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 337
Match NameE-valueIdentityDescription
MPA_MYCTU7.333e-1440.57Proteasome-associated ATPase OS=Mycobacterium tube... [more]
MPA_MYCLE7.333e-1440.57Proteasome-associated ATPase OS=Mycobacterium lepr... [more]
MPA_MYCBO7.333e-1440.57Proteasome-associated ATPase OS=Mycobacterium bovi... [more]
KTNA1_MACFA9.578e-1431.48Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN9.578e-1431.48Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
KTNA1_CHICK9.578e-1431.48Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
FIGL1_CAEEL9.578e-1435.76Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
VPS4_YEAST1.251e-1336.48Vacuolar protein sorting-associated protein 4 OS=S... [more]
KTNA1_SALSA1.634e-1330.25Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
VPS4_SCHPO8.108e-1331.45Suppressor protein of bem1/bed5 double mutants OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184994 ID=CN184994; Name=CN184994; organism=Citrus sinensis; type=EST; length=772bp
GAGGATTTAATTGAATGTTCTAACAGACATTGGAAAATCCACGTAATTAT
GAAATCATACAAAATGGTTCTTGAGAGGGCAAATGTTACACAAACACAGC
AAGTTTAAACAACAGAGAATCAAATTGATGGGACAGCCTCTCAAAGGAAC
TTCATGATCTTGGATAACCCTCTGAGAAGGTGGAACAATTGCGTCCAAGC
ATCTCTCCAGAAAGAAAAACATCGGAATCAATTGTAGACCATATATTTAG
GCGTTGCACTGAACTTTGATATCCCTTGATGACTTTGTTCACTGCATCGA
GGAAGTCTTTCTCTGTCACTGTTTTTCTTCGTGCCCGGATGGCAAACATC
CCAGCTTCTGTGCATACACTCCTTATATCAGCTCCTGTGGAATTGGGGCA
AAGCCTAGCCAAGAGCTCAAAGCGGATATCTCTTTCACAGTTCATTGTTC
GCGTGTGGATCTTAAATATCTGTGTCCGGCTCTCCAAATCAGGAAGGCCA
AACTCAACCTTACGATCTAATCGTCCGGGACGCAACAGGGCCGGATCAAG
TGTGTCAGGCCTGTTTGTTGCCATTAGAACTTTGATATTTCCACGAGCAT
CAAACCCATCAAGCTGATTCACAATTTCAAGCATTGTGCGTTGAACCTCG
TTGTCCCCGCCAACACCATCATCAAAACGTGCACCTCCTATAGCATCAAC
TTCATCAAAGAAGACAATACAAGCCTTCTTTGAACGTGCCATCTGAAATA
GTTCGCGAACCATACGAGCTCC
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