CN184994

Overview
NameCN184994
Unique NameCN184994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = -1
Query:  371 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIR 772
            GAR + EL+++A      ++F DE+DAIG  R    + GD  V   +  ++ ++DG +    +  + ATN P+ LD A+    R + ++EF LPD E R  + + +  TM  + D   + L +L    +G DI+
Sbjct:  201 GARQIHELYELASKTAPSVIFIDEMDAIGLDRRYQSLRGD--VSEVVNALLTEMDGINQNWGVVTIGATNNPELLDKAI--RSRFEEEIEFKLPDDEERKLMLEKYIETMPLKVDFPVDKLVKLTREMSGRDIK 330          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = -1
Query:  335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEV-QRTMLEIVNQLDG----FDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 766
            ++VR LF++AR     I+F DE+D +GG R   G  G++E  +R   E + Q+DG    FD+R  + VL ATN P  LD AL R  R ++++   LPD+++R ++ +          +I ++ LA      +GAD+ S+C  A +  +R
Sbjct:  272 KIVRLLFELARFYAPSIIFIDEIDTLGGQR---GNSGEHEASRRVKSEFLVQMDGSQNKFDSR-RVFVLAATNIPWELDEALRR--RFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLR 414          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12
Identity = 52/148 (35.14%), Postives = 85/148 (57.43%), Query Frame = -1
Query:  332 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 766
            ++V++LF+MAR K   ++F DEVD++  +R D         +R   E + Q++G   D+ G I VL ATN P  LD A+ R  R ++++  GLP+ ++R ++F+IH   T N      ++ LA L    +G+DI S+  +A M  +RA
Sbjct:  214 KLVKQLFEMAREKNNSVIFIDEVDSLCSSRNDQ---ESESARRIKTEFLIQMNGVGNDSDG-ILVLAATNIPWGLDLAIRR--RFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQPVRA 355          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12
Identity = 49/150 (32.67%), Postives = 79/150 (52.67%), Query Frame = -1
Query:  332 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQI-FKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 772
            G +MVR LF +AR ++  ++F DE+D++   R   G G     +R   E + QLDG       ++L+  ATNRP  +D A  R  RL +++   LP+  +R QI   + ++   C  D   EL+ +     +GAD+  +C EA +  IR+
Sbjct:  481 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIRS 625          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: FTSH_CHLVU (Cell division protease ftsH homolog OS=Chlorella vulgaris GN=ftsH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = -1
Query:  248 NEVQRTML-EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQSSVQRL 652
            NE Q ++L +++ +LDG   R  + +  ATNRP+ LDPALLRPGR D+ V+ GLP  + R +I + + +T+  ++ + +          T AD+ ++  E+ + AI            L+  N  I+  +  ++RL
Sbjct: 1148 NEKQVSLLSQLLIELDGIQGRNGVVIFGATNRPEVLDPALLRPGRFDKIVKVGLPAQKKRVEILQFYGQTLGYQKTMPWAYFGERTVGFTAADLATLMNESALKAI------------LNQSNHTIETLEHGIERL 1271          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 52/182 (28.57%), Postives = 90/182 (49.45%), Query Frame = -1
Query:  233 VRELFQMARSKKACIVFFDEVD-AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRF--ELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK---GYQSSVQRLNIWST 760
            VR++ Q A +   CI++ DE+D A  G+ F++  G    V  T +  +++      +  + V+   N  D+L P LLR GR D     GLPDL+ R  IFK+H + +  +    +  E+L+      +GA+I     EA   A    R+  T  D L+++ +V+      Q +++ L  W++
Sbjct:  323 VRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSGTTKRVFGTFITWLSE-----KKSPVFVVATANNIDSLPPELLRKGRFDEVFFIGLPDLKERECIFKVHLKKIRPKSWSTYDTEILSAQSNRFSGAEIEESIYEAMHIAFNENRE-FTTSDILNSLKRVVPLAYTSQKNIEELEDWAS 498          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 42/159 (26.42%), Postives = 78/159 (49.06%), Query Frame = -1
Query:  296 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 772
            GAR + EL+++A      ++F DE+DAIG  R    + GD  V   +  ++ ++DG +    +  + ATN P+ LD A+    R + ++EF LP  + R  + + +  TM  + D   + L +L    +G DI+    +  +    A      E++ ++
Sbjct:  201 GARQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRGD--VSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAI--RSRFEEEIEFKLPGDDERRMMLEKYIETMPLDVDFSVDKLVKLTKGMSGRDIKERVLKTALHRALADESPRVEREHIE 355          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 48/150 (32.00%), Postives = 79/150 (52.67%), Query Frame = -1
Query:  332 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF-KIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 772
            G +MVR LF +AR ++  ++F DE+D++   R   G G     +R   E + QLDG       ++L+  ATNRP  +D A  R  RL +++   LP+  +R QI   + ++   C  D   +L+ +     +GAD+  +C EA +  IR+
Sbjct:  487 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPIRS 631          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 54/182 (29.67%), Postives = 91/182 (50.00%), Query Frame = -1
Query:  281 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT----QIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR------------ARRKTVTEKDFLDAVNKV 772
            G ++VR LF +AR  +  I+F DEVD++   R D+        +R   E + + DG       +VL+  ATNRP  LD A LR  R  ++V   LPD  +R     ++ K H   ++ +   + + LARL    +G+D+ ++  +A +  IR             + + ++ +DFLD++ KV
Sbjct:  451 GEKLVRALFAVARELQPSIIFIDEVDSLLSERKDN---EHEATRRLKTEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALR--RFTKRVYVTLPDHNTRVILLEKLLKKHNNPLSAD---KLKYLARLTEGYSGSDLTALAKDAALGPIRELNPEQVRCVDPKKMRNISLQDFLDSLKKV 624          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12
Identity = 47/146 (32.19%), Postives = 77/146 (52.74%), Query Frame = -1
Query:  335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 766
            ++V+ LFQ+AR  K  I+F DE+D++ G+R ++        +R   E + Q+ G       I VL ATN P  LD A+ R  R ++++   LP+  +R  +F++H   T N   +  F+ L R     +GADI  +  +A M  +R
Sbjct:  214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354          
The following BLAST results are available for this feature:
BLAST of CN184994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 337
Match NameE-valueIdentityDescription
PRS2_METTH8.108e-1331.34Putative 26S protease regulatory subunit homolog M... [more]
MEI1_CAEEL8.108e-1334.23Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
VPS4_DICDI1.059e-1235.14Vacuolar protein sorting-associated protein 4 OS=D... [more]
FIGL1_RAT1.059e-1232.67Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
FTSH_CHLVU1.383e-1230.88Cell division protease ftsH homolog OS=Chlorella v... [more]
YCF46_GUITH1.806e-1228.57Uncharacterized AAA domain-containing protein ycf4... [more]
PRS2_METTM1.806e-1226.42Putative 26S protease regulatory subunit homolog M... [more]
FIGL1_MOUSE2.359e-1232.00Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
SPAST_IXOSC4.024e-1229.67Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]
VPS4B_MOUSE5.255e-1232.19Vacuolar protein sorting-associated protein 4B OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184994 ID=CN184994; Name=CN184994; organism=Citrus sinensis; type=EST; length=772bp
GAGGATTTAATTGAATGTTCTAACAGACATTGGAAAATCCACGTAATTAT
GAAATCATACAAAATGGTTCTTGAGAGGGCAAATGTTACACAAACACAGC
AAGTTTAAACAACAGAGAATCAAATTGATGGGACAGCCTCTCAAAGGAAC
TTCATGATCTTGGATAACCCTCTGAGAAGGTGGAACAATTGCGTCCAAGC
ATCTCTCCAGAAAGAAAAACATCGGAATCAATTGTAGACCATATATTTAG
GCGTTGCACTGAACTTTGATATCCCTTGATGACTTTGTTCACTGCATCGA
GGAAGTCTTTCTCTGTCACTGTTTTTCTTCGTGCCCGGATGGCAAACATC
CCAGCTTCTGTGCATACACTCCTTATATCAGCTCCTGTGGAATTGGGGCA
AAGCCTAGCCAAGAGCTCAAAGCGGATATCTCTTTCACAGTTCATTGTTC
GCGTGTGGATCTTAAATATCTGTGTCCGGCTCTCCAAATCAGGAAGGCCA
AACTCAACCTTACGATCTAATCGTCCGGGACGCAACAGGGCCGGATCAAG
TGTGTCAGGCCTGTTTGTTGCCATTAGAACTTTGATATTTCCACGAGCAT
CAAACCCATCAAGCTGATTCACAATTTCAAGCATTGTGCGTTGAACCTCG
TTGTCCCCGCCAACACCATCATCAAAACGTGCACCTCCTATAGCATCAAC
TTCATCAAAGAAGACAATACAAGCCTTCTTTGAACGTGCCATCTGAAATA
GTTCGCGAACCATACGAGCTCC
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