CN184994
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12 Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = -1 Query: 335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 766 ++V+ LFQ+AR K I+F DE+D++ G+R ++ +R E + Q+ G I VL ATN P LD A+ R R ++++ LP+ +R +FK+H T N + F L R +GADI + +A M +R Sbjct: 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 354
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12 Identity = 47/150 (31.33%), Postives = 78/150 (52.00%), Query Frame = -1 Query: 332 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQI-FKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 772 G +MVR LF +AR ++ ++F DE+D++ R G G +R E + QLDG ++L+ ATNRP +D A R RL +++ LP+ +R QI + ++ C + E + + +GAD+ +C EA + IR+ Sbjct: 478 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRS 622
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = -1 Query: 335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 766 ++V+ LFQ+AR K I+F DE+D++ G+R ++ +R E + Q+ G I VL ATN P LD A+ R R ++++ LP+ +R +FK+H T N + F L R +GADI + +A M +R Sbjct: 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 354
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 47/146 (32.19%), Postives = 76/146 (52.05%), Query Frame = -1 Query: 335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 766 ++V+ LFQ+AR K I+F DE+D++ G+R ++ +R E + Q+ G I VL ATN P LD A+ R R ++++ LP+ +R +FK+H T N + F L + +GADI + +A M +R Sbjct: 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVR 354
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11 Identity = 53/179 (29.61%), Postives = 92/179 (51.40%), Query Frame = -1 Query: 281 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK-IHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR------------ARRKTVTEKDFLDAVNKV 772 G ++VR LF +AR + I+F DEVD++ R + G + +R E + + DG + G+ +VL+ ATNRP LD A+LR R ++V LP+ E+R + K + ++ N + L+RL +G+DI ++ +A + IR + + + DFL ++ K+ Sbjct: 406 GEKLVRALFSVARELQPSIIFIDEVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKNMAASEMRNIKYSDFLSSLKKI 579
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11 Identity = 56/200 (28.00%), Postives = 95/200 (47.50%), Query Frame = -1 Query: 233 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR---------GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT-QIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR-----------ARRKTVTEKDFLDAVNKVIKGYQS-SVQRLNIWST 766 ++VR LF MA+ I+F DE+D++ AR D+ ++ +L + L A+ + VL ATN P +D A R R RK+ LPD E+R + ++ + N +D+ +EL+ + +G+D+ S+ EA M IR + + + KDF +A+ + K S S+Q+ WS+ Sbjct: 550 KLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARR--RFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIRDLGDKLMFADFDKIRGIEIKDFQNALLTIKKSVSSESLQKYEEWSS 747
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11 Identity = 53/179 (29.61%), Postives = 92/179 (51.40%), Query Frame = -1 Query: 281 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK-IHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR------------ARRKTVTEKDFLDAVNKV 772 G ++VR LF +AR + I+F DEVD++ R + G + +R E + + DG + G+ +VL+ ATNRP LD A+LR R ++V LP+ E+R + K + ++ N + L+RL +G+DI ++ +A + IR + + + DFL ++ K+ Sbjct: 403 GEKLVRALFSVARELQPSIIFIDEVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKNMAASEMRNMKYSDFLGSLKKI 576
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11 Identity = 51/152 (33.55%), Postives = 83/152 (54.61%), Query Frame = -1 Query: 335 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK---IHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 772 G ++VR LF +A + I+F DE+D++ + ++E R + EI+ Q DG G+ +VL+ ATNRP+ LD A LR RL +++ GLP+LE+R QI + + R ++ I LA + +G D+ ++C +A IR Sbjct: 461 GEKLVRALFAVATHFQPSIIFIDEIDSL----LTERSSNESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALR--RLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQQI--NSLAEVTQGYSGFDLAALCKDAAYEPIR 604
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11 Identity = 51/179 (28.49%), Postives = 92/179 (51.40%), Query Frame = -1 Query: 281 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK-IHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARR------------KTVTEKDFLDAVNKV 772 G ++VR LF +AR + I+F DE+D++ R + G + +R E + + DG + G+ +VL+ ATNRP LD A+LR R +++ LP E+R ++ K + ++ N LARL +G+D+ S+ +A + IR + + + DFL+++ ++ Sbjct: 372 GEKLVRALFAVARELQPSIIFIDEIDSLLCERRE---GEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLR--RFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRELKPEQVRNMSAHEMRDIRISDFLESLKRI 545
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11 Identity = 43/149 (28.86%), Postives = 72/149 (48.32%), Query Frame = -1 Query: 371 VRELFQMARSKKACIVFFDEVDAIGGARFD------------DGVGGDN------EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR-TMNCERDIRFELLARLCPNSTGADIR 760 V +LF+ ++ CI++ DE+D+I R + D + G N +++ + +DG+ R ++ ++ ATNR +TLD A++RPGR DR++ F P E R I +I R T D ++A G D+R Sbjct: 426 VDDLFKQIQNISPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPPFFEERKDILRIFLRNTKALVDDTTKTMMAERSIGLNGCDLR 574 The following BLAST results are available for this feature:
BLAST of CN184994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 337
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184994 ID=CN184994; Name=CN184994; organism=Citrus sinensis; type=EST; length=772bpback to top |