CN184994

Overview
NameCN184994
Unique NameCN184994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = -1
Query:  335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 766
            ++V+ LFQ+AR  K  I+F DE+D++ G+R ++        +R   E + Q+ G       I VL ATN P  LD A+ R  R ++++   LP+  +R  +FK+H   T N   +  F  L R     +GADI  +  +A M  +R
Sbjct:  214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 354          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 47/150 (31.33%), Postives = 78/150 (52.00%), Query Frame = -1
Query:  332 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQI-FKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 772
            G +MVR LF +AR ++  ++F DE+D++   R   G G     +R   E + QLDG       ++L+  ATNRP  +D A  R  RL +++   LP+  +R QI   + ++   C  +   E + +     +GAD+  +C EA +  IR+
Sbjct:  478 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRS 622          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = -1
Query:  335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 766
            ++V+ LFQ+AR  K  I+F DE+D++ G+R ++        +R   E + Q+ G       I VL ATN P  LD A+ R  R ++++   LP+  +R  +FK+H   T N   +  F  L R     +GADI  +  +A M  +R
Sbjct:  214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 354          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 47/146 (32.19%), Postives = 76/146 (52.05%), Query Frame = -1
Query:  335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 766
            ++V+ LFQ+AR  K  I+F DE+D++ G+R ++        +R   E + Q+ G       I VL ATN P  LD A+ R  R ++++   LP+  +R  +FK+H   T N   +  F  L +     +GADI  +  +A M  +R
Sbjct:  214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVR 354          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 53/179 (29.61%), Postives = 92/179 (51.40%), Query Frame = -1
Query:  281 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK-IHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR------------ARRKTVTEKDFLDAVNKV 772
            G ++VR LF +AR  +  I+F DEVD++   R +   G  +  +R   E + + DG  + G+ +VL+  ATNRP  LD A+LR  R  ++V   LP+ E+R  + K + ++  N   +     L+RL    +G+DI ++  +A +  IR            +  + +   DFL ++ K+
Sbjct:  406 GEKLVRALFSVARELQPSIIFIDEVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKNMAASEMRNIKYSDFLSSLKKI 579          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 56/200 (28.00%), Postives = 95/200 (47.50%), Query Frame = -1
Query:  233 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR---------GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT-QIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR-----------ARRKTVTEKDFLDAVNKVIKGYQS-SVQRLNIWST 766
            ++VR LF MA+     I+F DE+D++  AR D+       ++  +L   + L    A+           + VL ATN P  +D A  R  R  RK+   LPD E+R   + ++  +  N  +D+ +EL+  +    +G+D+ S+  EA M  IR            + + +  KDF +A+  + K   S S+Q+   WS+
Sbjct:  550 KLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARR--RFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIRDLGDKLMFADFDKIRGIEIKDFQNALLTIKKSVSSESLQKYEEWSS 747          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 53/179 (29.61%), Postives = 92/179 (51.40%), Query Frame = -1
Query:  281 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK-IHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR------------ARRKTVTEKDFLDAVNKV 772
            G ++VR LF +AR  +  I+F DEVD++   R +   G  +  +R   E + + DG  + G+ +VL+  ATNRP  LD A+LR  R  ++V   LP+ E+R  + K + ++  N   +     L+RL    +G+DI ++  +A +  IR            +  + +   DFL ++ K+
Sbjct:  403 GEKLVRALFSVARELQPSIIFIDEVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKNMAASEMRNMKYSDFLGSLKKI 576          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 51/152 (33.55%), Postives = 83/152 (54.61%), Query Frame = -1
Query:  335 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK---IHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 772
            G ++VR LF +A   +  I+F DE+D++      +    ++E  R +  EI+ Q DG    G+ +VL+  ATNRP+ LD A LR  RL +++  GLP+LE+R QI +   +  R    ++ I    LA +    +G D+ ++C +A    IR
Sbjct:  461 GEKLVRALFAVATHFQPSIIFIDEIDSL----LTERSSNESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALR--RLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQQI--NSLAEVTQGYSGFDLAALCKDAAYEPIR 604          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 51/179 (28.49%), Postives = 92/179 (51.40%), Query Frame = -1
Query:  281 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK-IHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARR------------KTVTEKDFLDAVNKV 772
            G ++VR LF +AR  +  I+F DE+D++   R +   G  +  +R   E + + DG  + G+ +VL+  ATNRP  LD A+LR  R  +++   LP  E+R ++ K + ++  N         LARL    +G+D+ S+  +A +  IR  +            + +   DFL+++ ++
Sbjct:  372 GEKLVRALFAVARELQPSIIFIDEIDSLLCERRE---GEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLR--RFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRELKPEQVRNMSAHEMRDIRISDFLESLKRI 545          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 43/149 (28.86%), Postives = 72/149 (48.32%), Query Frame = -1
Query:  371 VRELFQMARSKKACIVFFDEVDAIGGARFD------------DGVGGDN------EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR-TMNCERDIRFELLARLCPNSTGADIR 760
            V +LF+  ++   CI++ DE+D+I   R +            D + G N           +++ +  +DG+  R ++ ++ ATNR +TLD A++RPGR DR++ F  P  E R  I +I  R T     D    ++A       G D+R
Sbjct:  426 VDDLFKQIQNISPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPPFFEERKDILRIFLRNTKALVDDTTKTMMAERSIGLNGCDLR 574          
The following BLAST results are available for this feature:
BLAST of CN184994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 337
Match NameE-valueIdentityDescription
VPS4B_HUMAN6.864e-1232.88Vacuolar protein sorting-associated protein 4B OS=... [more]
FIGL1_HUMAN8.964e-1231.33Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
VPS4B_PONAB1.171e-1132.88Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN1.171e-1132.19Vacuolar protein sorting-associated protein 4B OS=... [more]
SPAST_XENTR1.171e-1129.61Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
TBP6_YEAST1.997e-1128.00Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
SPAST_XENLA3.406e-1129.61Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
SPAST_DICDI3.406e-1133.55Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
SPAST_DANRE3.406e-1128.49Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
YCF2_MESVI5.811e-1128.86Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184994 ID=CN184994; Name=CN184994; organism=Citrus sinensis; type=EST; length=772bp
GAGGATTTAATTGAATGTTCTAACAGACATTGGAAAATCCACGTAATTAT
GAAATCATACAAAATGGTTCTTGAGAGGGCAAATGTTACACAAACACAGC
AAGTTTAAACAACAGAGAATCAAATTGATGGGACAGCCTCTCAAAGGAAC
TTCATGATCTTGGATAACCCTCTGAGAAGGTGGAACAATTGCGTCCAAGC
ATCTCTCCAGAAAGAAAAACATCGGAATCAATTGTAGACCATATATTTAG
GCGTTGCACTGAACTTTGATATCCCTTGATGACTTTGTTCACTGCATCGA
GGAAGTCTTTCTCTGTCACTGTTTTTCTTCGTGCCCGGATGGCAAACATC
CCAGCTTCTGTGCATACACTCCTTATATCAGCTCCTGTGGAATTGGGGCA
AAGCCTAGCCAAGAGCTCAAAGCGGATATCTCTTTCACAGTTCATTGTTC
GCGTGTGGATCTTAAATATCTGTGTCCGGCTCTCCAAATCAGGAAGGCCA
AACTCAACCTTACGATCTAATCGTCCGGGACGCAACAGGGCCGGATCAAG
TGTGTCAGGCCTGTTTGTTGCCATTAGAACTTTGATATTTCCACGAGCAT
CAAACCCATCAAGCTGATTCACAATTTCAAGCATTGTGCGTTGAACCTCG
TTGTCCCCGCCAACACCATCATCAAAACGTGCACCTCCTATAGCATCAAC
TTCATCAAAGAAGACAATACAAGCCTTCTTTGAACGTGCCATCTGAAATA
GTTCGCGAACCATACGAGCTCC
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