CN184994

Overview
NameCN184994
Unique NameCN184994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 56/203 (27.59%), Postives = 96/203 (47.29%), Query Frame = -1
Query:  218 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGFDARGN---IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI-RFELLARLCPNSTGADIRSVCTEAGMFAIRA------------RRKTVTEKDFLDAVNKVIKGY-QSSVQRLNIWSTIDSDV 772
            G ++VR LF +AR  +  I+F DEVD++   R      G++E  R +  E + + DG     +   I VL ATNRP  LD A LR  R  ++V   LPD ++R  +     +      D      L+++    +G+D+ ++  +A +  IR               + +TEKDF +++ ++ +   Q S+     WS+   D+
Sbjct:  590 GEKLVRALFAVARHLQPSIIFIDEVDSLLSERSS----GEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAQQSLSSYEKWSSDYGDI 786          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 49/150 (32.67%), Postives = 81/150 (54.00%), Query Frame = -1
Query:  335 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG---ADIRSVCTEAGMFAIR 766
            + +R LFQ+AR+ +  I+F DE+D+I   R +     D EV R M  E + Q DG  +  + ++L+  ATNRP  LD A+LR  R  +++   LPD E+R ++     +  N    +    +  +  N++G   +D+ ++C EA M  IR
Sbjct:  318 KTIRGLFQIARNAQPSIIFIDEIDSILCERSEK----DAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIR 461          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 58/203 (28.57%), Postives = 96/203 (47.29%), Query Frame = -1
Query:  239 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGFDARGN--IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK------IHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR------------------ARRKTVTEKDFLDAVNKVIKGYQSSVQRLNIW 766
            ++VR LF++AR      +F DE++++   R   G GG++E  R M  E++ Q+DG  AR +  + VL A+N P  LD A+LR  RL++++   LP  E+R  + +       ++  +    D+ +  L       +G+DIR VC EA M  +R                      TVT  DFL+ +       +S  ++   W
Sbjct:  337 KLVRVLFELARYHAPSTIFLDELESVMSQR-GTGPGGEHEGSRRMKTELLVQMDGL-ARSDDLVFVLAASNLPWELDYAMLR--RLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFDALENHHSEHKNLPVISLDTVTTSDFLEVLAHTKPSAKSLAEKYAAW 535          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 47/150 (31.33%), Postives = 75/150 (50.00%), Query Frame = -1
Query:  332 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 772
            G +MVR LF +AR  +  ++F DE+D++   R   G G     +R   E + QLDG     + ++L+  ATNRP  +D A  R  RL +++   LP+  +R QI        +C   +   E +       +GAD+  +C EA +  IR+
Sbjct:  460 GEKMVRALFTVARCHQPAVIFIDEIDSLLSQR---GEGEHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGADMTQLCREAALGPIRS 604          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 53/199 (26.63%), Postives = 90/199 (45.23%), Query Frame = -1
Query:  218 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIR-FELLARLCPNSTGADIRSVCTEAGMFAIR------------ARRKTVTEKDFLDAVNKVIKGY-QSSVQRLNIWSTIDSDV 772
            G ++VR LF +AR  +  I+F DEVD++   R  +       ++   L   + L G      I VL ATNRP  LD A LR  R  ++V   LPD ++R  +     +      D      LA++    +G+D+ ++  +A +  IR            +  + +TEKDF +++ ++ +     S+     WS    D+
Sbjct:  579 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITEGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYEKWSQDYGDI 775          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 53/199 (26.63%), Postives = 91/199 (45.73%), Query Frame = -1
Query:  218 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI-RFELLARLCPNSTGADIRSVCTEAGMFAIR------------ARRKTVTEKDFLDAVNKVIKGY-QSSVQRLNIWSTIDSDV 772
            G ++VR LF +AR  +  I+F DEVD++   R  +       ++   L   + L G      I VL ATNRP  LD A LR  R  ++V   LPD+++R  +     +      D      LA++    +G+D+ ++  +A +  IR            +  + +TEKDF +++ ++ +     S+     WS    D+
Sbjct:  584 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRQITEKDFHNSLKRIRRSVAPQSLNSYEKWSQDYGDI 780          
BLAST of CN184994 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = -1
Query:  332 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 772
            G +MVR LF +AR  +  ++F DE+D++   R   G G     +R   E + QLDG       ++L+  ATNRP  +D A  R  RL +++   LP+  +R QI        +C   +   E +       +GAD+  +C EA +  IR+
Sbjct:  459 GEKMVRALFTVARCHQPAVIFIDEIDSLLSQR---GEGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIRS 603          
The following BLAST results are available for this feature:
BLAST of CN184994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 337
Match NameE-valueIdentityDescription
SPAST_DROPS5.811e-1127.59Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_CAEEL5.811e-1132.67Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
KATL2_XENTR7.589e-1128.57Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
FIGL1_XENTR7.589e-1131.33Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
SPAST_DROWI9.911e-1126.63Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
SPAST_DROGR9.911e-1126.63Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
FIGL1_XENLA9.911e-1131.33Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184994 ID=CN184994; Name=CN184994; organism=Citrus sinensis; type=EST; length=772bp
GAGGATTTAATTGAATGTTCTAACAGACATTGGAAAATCCACGTAATTAT
GAAATCATACAAAATGGTTCTTGAGAGGGCAAATGTTACACAAACACAGC
AAGTTTAAACAACAGAGAATCAAATTGATGGGACAGCCTCTCAAAGGAAC
TTCATGATCTTGGATAACCCTCTGAGAAGGTGGAACAATTGCGTCCAAGC
ATCTCTCCAGAAAGAAAAACATCGGAATCAATTGTAGACCATATATTTAG
GCGTTGCACTGAACTTTGATATCCCTTGATGACTTTGTTCACTGCATCGA
GGAAGTCTTTCTCTGTCACTGTTTTTCTTCGTGCCCGGATGGCAAACATC
CCAGCTTCTGTGCATACACTCCTTATATCAGCTCCTGTGGAATTGGGGCA
AAGCCTAGCCAAGAGCTCAAAGCGGATATCTCTTTCACAGTTCATTGTTC
GCGTGTGGATCTTAAATATCTGTGTCCGGCTCTCCAAATCAGGAAGGCCA
AACTCAACCTTACGATCTAATCGTCCGGGACGCAACAGGGCCGGATCAAG
TGTGTCAGGCCTGTTTGTTGCCATTAGAACTTTGATATTTCCACGAGCAT
CAAACCCATCAAGCTGATTCACAATTTCAAGCATTGTGCGTTGAACCTCG
TTGTCCCCGCCAACACCATCATCAAAACGTGCACCTCCTATAGCATCAAC
TTCATCAAAGAAGACAATACAAGCCTTCTTTGAACGTGCCATCTGAAATA
GTTCGCGAACCATACGAGCTCC
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