CN184992

Overview
NameCN184992
Unique NameCN184992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:158..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BRUA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella abortus (strain S19) GN=sucC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.188e-40
Identity = 101/237 (42.62%), Postives = 138/237 (58.23%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+  YG  +  G+AV SV++ ++  + +       VVKSQI AGGRG G FK   +  KGGV + K  EEV   A +MLG  LVTKQTG  GK V+++Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L  +   R D ++    LYK F E D +LLEINPL   +  ++   DAKV F   A FR
Sbjct:    1 MNIHEYQAKRLLHTYGAPIANGVAVYSVEQAEEWAKTL--PGPLYVVKSQIHAGGRGKGKFKELPADAKGGVRLAKSVEEVVANAKEMLGNTLVTKQTGEAGKQVNRLYIEDGADIERELYLSILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADALKLEGGAREDGLKLFPILYKAFTEKDMSLLEINPLIVMTNGRVRVLDAKVSFDNNALFR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_SULNB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sulfurovum sp. (strain NBC37-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.330e-40
Identity = 92/235 (39.15%), Postives = 141/235 (60.00%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA-PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +N+HEYQ  ++ A+YG+  PKG+   SVD   +A +++       VVK+QI AGGRGLG       GGV + K  +EV +LA ++LG  LVT QTGP+GK+V K+Y+ +   + +E Y +++LDRK   P+I+  ++GG +IED+AE  P  I+ VP+D   G       ++  GL     A++ + I   +KLYKL+ + D  ++EINPL  T   + +A D K+ F   A +R
Sbjct:    1 MNVHEYQAKQIFAEYGVPTPKGIMAESVDAAVEAAKEL--GGPIWVVKAQIHAGGRGLG-------GGVKLAKSLDEVRELADEILGMTLVTHQTGPEGKLVQKLYIEDGADIKDEFYLSVILDRKLEMPLIMASTEGGMNIEDVAENTPEKIITVPVDPTIGFQGFHGRELAFGLGITDKAEQKNIITFAQKLYKLYMDKDAEMIEINPLVRTGSGEFLALDGKMGFDNSALYR 226          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BART1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=sucC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.545e-39
Identity = 97/237 (40.93%), Postives = 136/237 (57.38%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+ +YG  +  G+AV S+++ +K  + +       VVKSQI AGGRG G FK      KGGV + +  EEV     +MLG+ LVTKQTGP+GK V+++Y+ +   +  E+Y ++++DR       +  ++GG  IE +AE+ P  I  +PIDV  G+T  D A++ D L    + R D  +    LYK FCE D +LLEINPL       L   DAKV F   A FR
Sbjct:    1 MNIHEYQAKRLLHEYGAPIANGVAVYSIEQAEKWAKKL--PGPLYVVKSQIHAGGRGKGQFKELGPDAKGGVRLAQSVEEVVANVQEMLGKTLVTKQTGPEGKQVNRLYIEDGADIERELYLSLLVDRSVGRIAFVVSTEGGMDIETVAEETPEKIFTLPIDVTEGVTSADCARLCDALELHDSAREDGEKLFPILYKAFCEKDMSLLEINPLIVMKDGHLRVLDAKVSFDNNALFR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BARHE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella henselae GN=sucC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.630e-39
Identity = 97/237 (40.93%), Postives = 137/237 (57.81%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+ +YG  +  G+AV SV++ +K  + +       VVKSQI AGGRG G FK      KGGV + K  EEV     +MLG+ LVTKQTGP+GK V+++Y+ +   +  E+Y ++++DR       +  ++GG  IE +AE+ P  I+ +PI+   G+T  D A++ D L    + R D  +    LYK FCE D +LLEINPL   +   L   DAKV F   A FR
Sbjct:    1 MNIHEYQAKRLLHEYGAPIANGVAVYSVEQAEKWAKKL--PGPLYVVKSQIHAGGRGKGKFKELDPDAKGGVRLAKSVEEVVANVKEMLGKTLVTKQTGPEGKQVNRLYIEDGADIERELYLSLLVDRNVGRVAFVVSTEGGMDIETVAEETPEKILTLPINSTQGVTSSDCARLCDALDLHDSAREDGEKLFPILYKAFCEKDMSLLEINPLIVMTNGHLRVLDAKVSFDNNALFR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BARBK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=sucC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.630e-39
Identity = 100/237 (42.19%), Postives = 136/237 (57.38%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+ +YG  V  G+AV SV++ +K  + +       VVKSQI AGGRG G FK   S  KGGV + K  EEV     +MLG+ LVTKQTGP+GK V+++Y+ +  ++  E+Y ++++DR T     +  ++GG  IE +A + P  I  + ID   G+TD D  K+ D L      R D  +    LYK FCE D +LLEINPL      +L   DAKV F   A FR
Sbjct:    1 MNIHEYQAKRLLHEYGAPVANGVAVYSVEQAEKWAKKL--PGPLYVVKSQIHAGGRGKGNFKELDSDAKGGVRLAKSVEEVVANVKEMLGKTLVTKQTGPEGKQVNRLYIEDGANIERELYLSLLIDRTTGRVAFVVSTEGGMDIETVAAETPEKICTLSIDPAEGVTDADCVKLCDELNLSGNAREDGEKLFPILYKAFCEKDMSLLEINPLIVMDDGRLRVLDAKVSFDNNALFR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCB2_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C50F7.4 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.298e-38
Identity = 94/242 (38.84%), Postives = 144/242 (59.50%), Query Frame = 1
Query:  145 QQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKG--GVHIVKKEEVE-DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + Q R LN+ E+Q  E++ K+G +V   +  ++  E ++     F DH E VVK+QILAGGRG G F +G KG  GV I K+++   +   +M+G+ LVTKQT  +G  V KV + E + +  E Y A+++DR++ GP+++    GG  IE +AEK P  I K PID+  G+T+  + K+   L  +      A +++K+LY LF   D T +EINPL ET+  ++   DAK+ F   AA+R
Sbjct:   14 KSQRRFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMS-FGDH-EYVVKAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKVMIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMTEGQSLKIAKDLQFEGKLIGVAAQEIKRLYDLFIAVDATQVEINPLVETADGRVFCVDAKMNFDDSAAYR 253          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_SULDN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=sucC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.001e-38
Identity = 92/230 (40.00%), Postives = 134/230 (58.26%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRND---AIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF 840
            +NIHEYQ  ++ AKYG+  PKGL   SV +     + +       VVK+QI AGGRGLG       GGV + +  EEVE L+ ++LG  LVT QTGP+GK+V K+Y+ E   +  E+Y  ++LDR    P+I+  ++GG +IED+A   P  I+K+ +D   G       ++V GL   + D N+    I    KLYKL+ E+D  ++EINPL +T   + +A D K+ F
Sbjct:    1 MNIHEYQAKQIFAKYGVPTPKGLMAESVKQAVANAETL--GGSIWVVKAQIHAGGRGLG-------GGVKLARSLEEVEQLSKEILGMTLVTHQTGPEGKLVQKLYIEEGADIKEELYLGVVLDRAREMPVIMASTEGGMAIEDVAHNTPEKIIKIAVDPAIGFQGFHGRELVFGLG--ITDPNEQKKLISFASKLYKLYMENDAEMIEINPLVKTGSGEFLALDGKMGF 219          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_EXIS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=sucC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.920e-38
Identity = 92/234 (39.32%), Postives = 136/234 (58.12%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +N+HEYQ  EL+  YG+ VP G+A  +V+E   A + +    K  VVK+QI AGGRG         GGV + K +EEV++ A ++LG+ LVT QTGP+GK++ ++ + E  ++  E Y  I+LDR T   +I+G S+GG  IE++AE  P  I+K  +D   G+    A K+   +   V   N  +  V KLY  F + DC++ EINPL  T    ++A DAK+ F   A +R
Sbjct:    1 MNVHEYQAKELLRSYGVPVPNGIAAFTVEEAVDAAEQLSGPIK--VVKAQIHAGGRGKA-------GGVKLAKSQEEVKEFATELLGKTLVTHQTGPEGKVIQRLLVEEGCAIDKEYYLGIVLDRVTGRVVIMGSSEGGMDIEEVAEATPEKIIKEVVDPAVGLQAFQARKLAFAMGVPVKLVNKFVGMVTKLYTFFVDKDCSIAEINPLVTTKDGDVLALDAKLNFDSNALYR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_ACIBL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidobacteria bacterium (strain Ellin345) GN=sucC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.920e-38
Identity = 93/228 (40.79%), Postives = 134/228 (58.77%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDH-KELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF 840
            + IHEYQG  ++ KYG+ VP+G  V + +E ++   D+  D  K +VVK+QI AGGRG G       GGV I K  +E   LAGK+LG  L+T QTGP+GK V ++ + E L +  E+Y +I+LDR    P+ +  + GG  IE++A K PN I+K  I+   G+    A K+   L  K      A++ ++ LYK + E+D +L+EINP   TS  +L A DAK  F
Sbjct:    1 MKIHEYQGKAILRKYGVAVPRGEMVTTREEAERVANDLMHDGAKGVVVKAQIHAGGRGKG-------GGVKIAKSVDEAGQLAGKILGMTLITHQTGPEGKKVQRLLIEETLPIERELYLSIVLDRSNGKPVFMASAAGGMEIEEVAAKDPNAIIKEWIEPGYGLGAFQARKIAFKLGLKPELIGQAVKFMQALYKTYDETDASLVEINPFITTSDNRLFALDAKFNF 221          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BACP2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus pumilus (strain SAFR-032) GN=sucC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.120e-38
Identity = 92/234 (39.32%), Postives = 138/234 (58.97%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQG E++ KYG++VP G    + DE  KA++++  +    VVK+QI AGGRG         GGV I K K+EV+  A ++LG+ LVT QTGP+G+ + ++ + E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  IVKV ID   G+    A +V   +         A++ +  LY  F E DC++ EINPL  T   +++A DAK+ F   A +R
Sbjct:    1 MNIHEYQGKEILRKYGVSVPNGKVAFTPDEAVKASEEL--ESSVYVVKAQIHAGGRGKA-------GGVKIAKTKDEVKGFAEELLGKTLVTHQTGPEGREIKRLLIEEGCDIQKEYYVGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIVKVVIDPAIGLQGYQAREVAFKINIPTKLVGQAVKFMTSLYNAFIEKDCSIAEINPLVVTGDGKVMALDAKLNFDSNALYR 225          
The following BLAST results are available for this feature:
BLAST of CN184992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_BRUA14.188e-4042.62Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SULNB9.330e-4039.15Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BART13.545e-3940.93Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARHE4.630e-3940.93Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARBK4.630e-3942.19Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB2_CAEEL2.298e-3838.84Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCC_SULDN3.001e-3840.00Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EXIS23.920e-3839.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIBL3.920e-3840.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACP25.120e-3839.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184992 ID=CN184992; Name=CN184992; organism=Citrus sinensis; type=EST; length=861bp
GAGGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCACGTACAT
CTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATTGTTAA
ACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGCAACAG
CAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGTTGATGGC
CAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGTTGATG
AAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGAGCTGGTG
GTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTTAAGTC
TGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTTGAAGATT
TAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTGGTCCA
CAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCACTTGT
CAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTA
TAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAG
AAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAAT
CACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTG
CTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTT
TGTGAGAGTGACTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTC
TGGGTAGCAGTTGGTGGCTGCTGATGCTAAAGTGAAATTTTGATGATATG
CTGCCTTCCGT
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