CN184992

Overview
NameCN184992
Unique NameCN184992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:158..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_CORGL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Corynebacterium glutamicum GN=sucC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 68/236 (28.81%), Postives = 122/236 (51.69%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +++ EYQ  +L   +G+ V KG+  ++ +  +KA +++       VVK+Q+  GGRG         GGV +     +  D A  +LG  +       +G  V++V + +   +  E YF+I+LDR     + +   +GG  IE LA++ P  + KV +D   GI ++ A ++V   G   +VA++   I  + K+++++ E + TL+E+NPL  T    ++A D K+     A FR
Sbjct:    1 MDLFEYQARDLFETHGVPVLKGIVASTPEAARKAAEEI---GGLTVVKAQVKVGGRGKA-------GGVRVAPTSAQAFDAADAILGMDI-------KGHTVNQVMVAQGADIAEEYYFSILLDRANRSYLAMCSVEGGMEIEILAKEKPEALAKVEVDPLTGIDEDKAREIVTAAGFETEVAEK--VIPVLIKIWQVYYEEEATLVEVNPLVLTDDGDVIALDGKITLDDNADFR 217          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_ARTAT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter aurescens (strain TC1) GN=sucC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 69/234 (29.49%), Postives = 113/234 (48.29%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +++ EYQ  ++   +G+ V  G+   + +E K A + +       VVK+Q+  GGRG         GGV + K  EE  + +  +LG  +       +G  V+KV + +   +  E YF+++LDR     + +   +GG  IE LA + P  + K+ ID   GI    A ++V         R    + + KL+ +F + D TL+E+NPL  T   ++VA D KV     A FR
Sbjct:    1 MDLFEYQARDMFEAHGVPVLAGIVAHTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTAEEALEHSTNILGMDI-------KGHTVNKVMIAQGADIAEEFYFSVLLDRANRNYLAMCSVEGGMEIEQLAVERPEALAKIAIDPAVGIDQAKADEIVAAAGFAEELRGKVADVILKLWDVFKKEDATLVEVNPLVRTGAGEIVALDGKVSLDENADFR 217          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_MYCVP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.700e-21
Identity = 70/235 (29.79%), Postives = 117/235 (49.79%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +++ EYQ  EL AK+ +    G    S ++ K   +++    K ++VK+Q+  GGRG    K+G  G  +    E+    A  +LG  +       +G IV K+ + E   +  E Y + +LDR     + +   +GG  IE++A   P  + KVP+D   G+ +  A ++ +   L  +V D   A   + KL+++F + D TL+E+NPL  T   Q++A D KV     A FR
Sbjct:    1 MDLFEYQAKELFAKHNVPTTPGRVTESAEDAKAIAEEI---GKPVMVKAQVKVGGRG----KAG--GVKYAATPEDALTHAQNILGLDI-------KGHIVKKLLVAEASDIAEEYYISFLLDRANRTYLAMCSVEGGMEIEEVAATKPERLAKVPVDAVKGVDEAFAREIAEKGHLPAEVLDA--AAVTIAKLWEVFVKEDATLVEVNPLVRTPDDQILALDGKVTLDANADFR 217          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit beta-1 OS=Archaeoglobus fulgidus GN=sucC1 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.700e-21
Identity = 69/225 (30.67%), Postives = 116/225 (51.56%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKV 834
            + +HE+Q  ++ AK+GI VP+G    S +E +K  + +      +VVK+QIL GGRG         GGV      EE +++A K+LG  +       +G  V KV + E+L++  E Y   ++D+ +  P +I    GG  +E++A K+P+ I ++  D   G+ D +  K +     +  +     + +KKL  +    +  L EINPLA T     +AADA++
Sbjct:    1 MRLHEHQAKQIFAKHGIRVPRGEVATSPEEAEKIAEKL---GGRVVVKAQILVGGRGKA-------GGVKKANSPEEAKEVAKKILGMTI-------KGHRVEKVLVEEQLNMRKEYYVGYVVDKSSRLPTVIFSRMGGMDVEEIAAKHPDAIHRIYFDPLWGLKDYEVRKALFRAGFEGEEFKQMFDIIKKLVDIAFAYEAELTEINPLAVTDE-GFLAADARL 207          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_SALAI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salinispora arenicola (strain CNS-205) GN=sucC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 74/236 (31.36%), Postives = 115/236 (48.73%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            ++++EYQG +L  ++G+ V  G    + +E +   + +      +VVK+Q+  GGRG         GGV + +  +E    A  +LG  +       +G  V KV +     +  E YF+ +LDR     + I    GG  IE +A + P  +VK PID   G+    A +++   G   +V D+  A+E    L+K F   D TL+E+NPLA T    L+  DAKV     AAFR
Sbjct:    1 MDLYEYQGRDLFERHGLPVLAGGVATTPEEARAIAERL---GGRVVVKAQVKVGGRGKA-------GGVKLAEGADETVARATDILGMDI-------KGHTVHKVMITVTADVAEEYYFSYLLDRANRTFLCIASVAGGMDIEQVAAETPEKVVKAPIDANTGVDAAMARQIITRAGFPAEVVDQ--AVEVAVDLWKAFVAEDATLVEVNPLARTGQGGLLLLDAKVSLDENAAFR 217          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_CHLSY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=sucC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 74/236 (31.36%), Postives = 122/236 (51.69%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKG-LAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQV-KKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + +HEYQ  +L+A++GI V  G +AV  V+    A +   P    +VVK+Q+  GGRG         GGV + +   E E +A ++LG  +       +G  V KV + E +S   E+Y + +LDR +   ++I  ++GG  IE++A+  P+ I+K+P     G+ D  A ++   +      +     Q+   LY+ F E D +L+EINPL   +   L+A D+K+     A FR
Sbjct:    1 MKLHEYQARDLLARFGIPVTGGGVAVTPVEARTIAAEIGGP----VVVKAQVHVGGRGKA-------GGVKLAQTPTEAEQVARQILGMNI-------KGLTVEKVLVAEAVSYKRELYLSAILDRGSKRVMMIASAEGGVEIEEVAKTNPDAIIKIPAHPTMGLLDFQARELAFRIGLNDGKQARQFAQIASALYRAFVECDASLVEINPLVVKADGSLLALDSKILLDESALFR 218          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_CHLAA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=sucC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 74/236 (31.36%), Postives = 122/236 (51.69%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKG-LAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQV-KKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + +HEYQ  +L+A++GI V  G +AV  V+    A +   P    +VVK+Q+  GGRG         GGV + +   E E +A ++LG  +       +G  V KV + E +S   E+Y + +LDR +   ++I  ++GG  IE++A+  P+ I+K+P     G+ D  A ++   +      +     Q+   LY+ F E D +L+EINPL   +   L+A D+K+     A FR
Sbjct:    1 MKLHEYQARDLLARFGIPVTGGGVAVTPVEARTIAAEIGGP----VVVKAQVHVGGRGKA-------GGVKLAQTPTEAEQVARQILGMNI-------KGLTVEKVLVAEAVSYKRELYLSAILDRGSKRVMMIASAEGGVEIEEVAKTNPDAIIKIPAHPTMGLLDFQARELAFRIGLNDGKQARQFAQIASALYRAFVECDASLVEINPLVVKADGSLLALDSKILLDESALFR 218          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_ARTCA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=sucC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.655e-20
Identity = 68/234 (29.06%), Postives = 113/234 (48.29%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +++ EYQ  ++   +G+ V  G+   + +E K A + +       VVK+Q+  GGRG         GGV + K  +E  + +  +LG  +       +G  V+KV + +   +  E YF+++LDR     + +   +GG  IE LA + P  + K+ ID   GI    A ++V         R    + + KL+ +F + D TL+E+NPL +T    +VA D KV     A FR
Sbjct:    1 MDLFEYQARDMFEAHGVPVLAGIVAYTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKSADEALEHSTNILGMDI-------KGHTVNKVMIAQGADIAEEYYFSVLLDRANRNYLAMCSVEGGMEIEQLAVERPEALAKIAIDPAVGIDQAKADEIVAAAGFAEELRGKVADVILKLWDVFKKEDATLVEVNPLVKTGAGDIVALDGKVSLDENAEFR 217          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_METTH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Methanobacterium thermoautotrophicum GN=sucC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 69/229 (30.13%), Postives = 117/229 (51.09%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVK----KLYKLFCESDCTLLEINPLAETSG*QLVAADAKVK 837
            +  +EY   E+    GI+ P+G    + +E ++   ++  D   + VKSQ+L GGRG         GG+       V ++ G +L   +       +G+ V KV + EK+ +  E+Y + ++DR    P+I+  ++GG  IE+LA + P  IV+  I+  +     +A ++    A K+   ++ I  V     KLY+LF + D  L EINPL   SG  ++AADAK++
Sbjct:    1 MKFYEYSAKEIFRAEGISTPRGGVAETPEEAERIAAELGCD---VAVKSQVLTGGRGKA-------GGIRFASPSGVAEVTGDLLSSEV-------RGETVEKVLIEEKIPIDRELYVSAVIDRTAKMPLIMASAEGGVDIEELAARSPEKIVRYHINPLDEFLPYEAREI----ARKMGLESELIPSVGGVIWKLYQLFRKYDARLAEINPLV-ISGDSVIAADAKLE 207          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_ARTS2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Arthrobacter sp. (strain FB24) GN=sucC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 69/234 (29.49%), Postives = 114/234 (48.72%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +++ EYQ  ++   +G+ V  G+   + +E K A + +       VVK+Q+  GGRG         GGV + K  +E  + +  +LG  +       +G  V+KV + +   +  E YF+++LDR     + +   +GG  IE LA + P+ + KV ID   GI    A ++V         R    + + KL+ +F + D TL+E+NPL +T    +VA D KV     A FR
Sbjct:    1 MDLFEYQARDMFEAHGVPVLAGIVAHTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTADEALEHSTNILGMDI-------KGHTVNKVMIAQGADIAEEYYFSVLLDRANRNYLAMCSVEGGMEIEQLAVERPDALAKVAIDPAVGIDQAKADEIVAAAGFAEELRGKVADVILKLWDVFKKEDATLVEVNPLVKTGAGDIVALDGKVTLDENADFR 217          
The following BLAST results are available for this feature:
BLAST of CN184992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_CORGL7.427e-2128.81Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ARTAT7.427e-2129.49Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MYCVP9.700e-2129.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC1_ARCFU9.700e-2130.67Succinyl-CoA ligase [ADP-forming] subunit beta-1 O... [more]
SUCC_SALAI1.267e-2031.36Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLSY1.267e-2031.36Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLAA1.267e-2031.36Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ARTCA1.655e-2029.06Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_METTH2.161e-2030.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ARTS22.161e-2029.49Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184992 ID=CN184992; Name=CN184992; organism=Citrus sinensis; type=EST; length=861bp
GAGGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCACGTACAT
CTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATTGTTAA
ACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGCAACAG
CAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGTTGATGGC
CAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGTTGATG
AAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGAGCTGGTG
GTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTTAAGTC
TGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTTGAAGATT
TAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTGGTCCA
CAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCACTTGT
CAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTA
TAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAG
AAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAAT
CACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTG
CTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTT
TGTGAGAGTGACTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTC
TGGGTAGCAGTTGGTGGCTGCTGATGCTAAAGTGAAATTTTGATGATATG
CTGCCTTCCGT
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