CN184992

Overview
NameCN184992
Unique NameCN184992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_ALKMQ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus metalliredigens (strain QYMF) GN=sucC PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.660e-37
Identity = 89/227 (39.21%), Postives = 135/227 (59.47%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF 840
            +NIHEYQG E+M +YGI+VP+     +V+E  +A  D+    + + VK+QI AGGRG         GGV I +  EE +  A  +L +IL+TKQTGP+GK+V++V + E L +  E Y +  +D  T+  ++IG  +GG  IE++AEK P+ I K  ID   G+    A ++   +    A   +A + +  +Y+LF E DC+++EINPL  T   ++VA D KV F
Sbjct:    1 MNIHEYQGKEIMKQYGISVPRSRITFTVEEAVQAAIDL--GCEVIAVKAQIHAGGRGKA-------GGVKITRSLEETKSAAEAILDKILITKQTGPEGKVVNQVLIEEGLKIEKECYLSCAVDSTTSTVVLIGSPEGGMDIEEVAEKTPHKIFKESIDPAIGLQQYQARRLAFNMGINEACLQEAAQCIMNIYRLFMEKDCSMVEINPLITTEEHKVVALDCKVCF 218          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_NAUPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=sucC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.393e-37
Identity = 87/227 (38.33%), Postives = 133/227 (58.59%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF 840
            +NIHEYQ  E+  KYG+  P+G    +  E ++  +++       VVK+QI AGGRG         GGV + K  +EVE +A +MLG  LVT QTGP+GK+V KVY+ E   + +E+Y  ++LDR    P+++  ++GG  IE++AEK P  I+KV ID   G     A K+  GL     ++ + I+    LY ++ ++D  ++EINPL +T   + +A DAK+ F
Sbjct:    1 MNIHEYQAKEIFRKYGVPTPRGGVAFTGPEARRVAEEL--GGNLWVVKAQIHAGGRGKA-------GGVKLAKSLDEVEKIAEEMLGMTLVTHQTGPEGKVVKKVYIEEGADIKDELYLGMVLDRALEMPVMMASTEGGMEIEEVAEKTPEKIIKVAIDPAIGFQPFHARKLAFGLGLPKDEQREFIKFASALYNVYMDNDAEMIEINPLIKTGDGKFLALDAKMGF 218          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_EXISA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=sucC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.393e-37
Identity = 91/234 (38.89%), Postives = 135/234 (57.69%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ  EL+ ++G+ VP G    +V+E   A   +  D +  VVK+QI AGGRG         GGV + K  EEV+  A ++LG+ LVT QTGP+GK+V ++Y+ E  ++  E Y  ++LDR     +I+G S+GG  IE++AE  P  I K  +D   G+    A ++   +       N+  + V KLYK++ E+DCT+ EINPL  T    ++A DAK+ F   A +R
Sbjct:    1 MNIHEYQAKELLREFGVAVPTGYPAFTVEEAVAAAAKL--DGEVKVVKAQIHAGGRGKA-------GGVKLAKTDEEVKQYASEILGKTLVTHQTGPEGKVVQRLYIEEGSAIDQEFYLGLVLDRSIGRIVIMGSSEGGMDIEEVAEHTPEKIHKEIVDPVVGLRPFQARRLAFKMEVPTKLVNEFSDMVMKLYKVYVETDCTIAEINPLVTTKDGNVIALDAKLNFDSNALYR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BURS3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia sp. (strain 383) GN=sucC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.393e-37
Identity = 95/238 (39.92%), Postives = 142/238 (59.66%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + IHEYQG E++ K+G+ VP+G    SVDE  K  +++       VVK+QI AGGRG G       GGV + K  E+V + A ++LG  LVT QTGP+G+ V+++ + E   +  E+Y ++++DR T   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +S  +++A DAK  F   A FR
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMVEEGADIKQELYVSLVVDRVTQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSSDGKVIALDAKFNFDSNALFR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCB_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit beta, hydrogenosomal OS=Trichomonas vaginalis PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.393e-37
Identity = 87/230 (37.83%), Postives = 135/230 (58.70%), Query Frame = 1
Query:  157 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTF-KSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF 840
            R  NI E+Q  E+ AKY +     L   S +E  +A + +  +    V+K+Q+  GGRG G + ++G K GVH VK  +E   +A +MLG  LVTKQTG  G +   V L + + +  E+YFAI+LDR+T  P++I  ++GG  IE++A  +P  I K  +D   GIT+E A  +   L       ++ + +++KL+KLF  SD T +E+NPLAET+  +++  D+K  F
Sbjct:    8 RNFNILEWQSKEICAKYNVAAGINLVARSPEEAAEAFRKM--NLPAAVIKAQVYCGGRGKGHWLETGFKSGVHFVKSADEAAKIAKEMLGHHLVTKQTGKDGLLCQAVMLSDPVEVKRELYFAILLDRQTQSPVVIASTEGGVEIEEVAAHHPEKIHKFVLDGVEGITEEVAKNISTKLGLTGKAYDNGVVEMQKLWKLFVGSDATQVEVNPLAETTDGRIITVDSKFNF 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_RHIME (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium meliloti GN=sucC PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.655e-37
Identity = 98/237 (41.35%), Postives = 132/237 (55.70%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+  YG  V +G+A+ S DE + A + +       VVKSQI AGGRG G FK      KGGV + K  +EV   A  MLG  LVTKQTGP GK V+++Y+ +   +  E+Y +I++DR       +  ++GG  IE +AE  P  IV V ID   G+T E+   + D L  +   R DA +    LYK F E D +LLE+NPL   +  ++   DAKV F   A FR
Sbjct:    1 MNIHEYQAKALLKSYGAPVAEGVAIFSADEAEAAAKKL--PGPLYVVKSQIHAGGRGKGKFKELGPDAKGGVRLAKSVDEVVANAKDMLGNTLVTKQTGPAGKQVNRLYIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIEAVAEHTPEKIVTVAIDPEKGVTAENLKTLADALKLEGEARADAEKLFPILYKAFVEKDMSLLEVNPLIVMTNGRMRVLDAKVSFDGNALFR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_SINMW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=sucC PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.647e-36
Identity = 97/237 (40.93%), Postives = 132/237 (55.70%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+  YG  V +G+A+ S DE   A + +       VVKSQI AGGRG G FK   +  KGGV + K  +EV   A +MLG  LVTKQTGP GK V+++Y+ +   +  E+Y +I++DR       +  ++GG  IE +AE  P  IV V ID   G+T +D   + + L      R DA +    LYK F E D +LLE+NPL   +  ++   DAKV F   A FR
Sbjct:    1 MNIHEYQAKALLKSYGAPVAEGVAIFSADEAAAAAKKL--PGPLYVVKSQIHAGGRGKGKFKELGADAKGGVRLAKSADEVVAHAREMLGNTLVTKQTGPSGKQVNRLYIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIEAVAEHTPEKIVTVAIDPDKGVTADDLKTLTEALKLDGEARADAEKLFPILYKAFVEKDMSLLEVNPLIVMTNGRMRVLDAKVSFDGNALFR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=sucC PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.647e-36
Identity = 94/237 (39.66%), Postives = 131/237 (55.27%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+  YG  V  G  V   DE K A  ++       VVK+QI AGGRG G FK   +G KGGV + K   E  +LA +MLG+ LVT QTGP GK V+++Y+ E   +  E+Y A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L  + A     ++ VK LY+ F E D  +LEINPL   +   L   DAKV F   A +R
Sbjct:    1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPSGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLEGAQVKQCVQLVKNLYRAFVEKDMEMLEINPLIVMTDGNLKVLDAKVGFDNNALYR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_GEOLS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=sucC PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.647e-36
Identity = 91/234 (38.89%), Postives = 135/234 (57.69%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ  E+++ YGI VP+     + D+V++A + +   H   VVK+QI AGGRG         GGV +V   E+  D+A ++ G+ LVTKQTGP+G  V ++ + E + +  E Y +I LDR+T+   +I  ++GG  IE++A+K P+ I  + ID F G+    A K+   L    A   D +E +   YK   E DC+L+EINPL  T    L+A DAK+ F   A +R
Sbjct:    1 MNIHEYQAKEILSTYGIPVPRNRVALTADQVERAAK-MMGGH--CVVKAQIYAGGRGKA-------GGVKLVHHPEQASDVAKELFGKRLVTKQTGPEGLKVRRILVEETVEIAREFYLSITLDRETSRYCLIASAEGGMDIEEVAQKSPDKIHVLTIDPFTGLRTYQARKIALALGLSGAVCEDCVELILNTYKCCLEKDCSLIEINPLVVTRAGWLLAMDAKISFDDNAVYR 224          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_RHOSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 94/237 (39.66%), Postives = 131/237 (55.27%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+  YG  V  G  V   DE K A  ++       VVK+QI AGGRG G FK   +G KGGV + K   E  +LA +MLG+ LVT QTGP GK V+++Y+ E   +  E+Y A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L  + A     ++ VK LY+ F E D  +LEINPL   +   L   DAKV F   A +R
Sbjct:    1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLEGAQVKQCVQLVKNLYRAFVEKDMEMLEINPLIVMTDGNLKVLDAKVGFDNNALYR 235          
The following BLAST results are available for this feature:
BLAST of CN184992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_ALKMQ5.660e-3739.21Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NAUPA7.393e-3738.33Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EXISA7.393e-3738.89Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURS37.393e-3739.92Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB_TRIVA7.393e-3737.83Succinyl-CoA ligase [GDP-forming] subunit beta, hy... [more]
SUCC_RHIME9.655e-3741.35Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SINMW1.647e-3640.93Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOS51.647e-3639.66Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOLS1.647e-3638.89Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOSK2.151e-3639.66Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184992 ID=CN184992; Name=CN184992; organism=Citrus sinensis; type=EST; length=861bp
GAGGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCACGTACAT
CTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATTGTTAA
ACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGCAACAG
CAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGTTGATGGC
CAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGTTGATG
AAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGAGCTGGTG
GTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTTAAGTC
TGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTTGAAGATT
TAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTGGTCCA
CAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCACTTGT
CAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTA
TAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAG
AAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAAT
CACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTG
CTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTT
TGTGAGAGTGACTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTC
TGGGTAGCAGTTGGTGGCTGCTGATGCTAAAGTGAAATTTTGATGATATG
CTGCCTTCCGT
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