CN184992

Overview
NameCN184992
Unique NameCN184992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 94/237 (39.66%), Postives = 131/237 (55.27%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+  YG  V  G  V   DE K A  ++       VVK+QI AGGRG G FK   +G KGGV + K   E  +LA +MLG+ LVT QTGP GK V+++Y+ E   +  E+Y A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L  + A     ++ VK LY+ F E D  +LEINPL   +   L   DAKV F   A +R
Sbjct:    1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLEGAQVKQCVQLVKNLYRAFVEKDMEMLEINPLIVMTDGNLKVLDAKVGFDNNALYR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_RHOS1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 94/237 (39.66%), Postives = 131/237 (55.27%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+  YG  V  G  V   DE K A  ++       VVK+QI AGGRG G FK   +G KGGV + K   E  +LA +MLG+ LVT QTGP GK V+++Y+ E   +  E+Y A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L  + A     ++ VK LY+ F E D  +LEINPL   +   L   DAKV F   A +R
Sbjct:    1 MNIHEYQAKALLRSYGAPVSDGRVVLKADEAKSAAGEL--GGPLWVVKAQIHAGGRGKGKFKEPEAGEKGGVRLAKSVGEAAELAKQMLGRTLVTHQTGPAGKQVNRIYIEEGSDIARELYLALLVDRGTSRISFVVSTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLEGAQVKQCVQLVKNLYRAFVEKDMEMLEINPLIVMTDGNLKVLDAKVGFDNNALYR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_CHLL2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 88/236 (37.29%), Postives = 139/236 (58.90%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQG +++ K+G++VP+G+   S DE K+A Q +F +     +VVK+QI AGGRG         GGV + K  +E  ++A +MLG  LVT QTGP+GK VS++ + E +++  E Y  I LDR T+  +++  ++GG  IE +AE+ P+ ++K+ +D   G+    A +    L  +     +A+  +  LY  +   D +L EINPL  T   +++A DAK+ F   A FR
Sbjct:    1 MNIHEYQGKDILKKFGVSVPRGIVAFSPDEAKQAAQQLFEEQGSPVVVVKAQIHAGGRGKA-------GGVKLAKSPDEAMEIARQMLGATLVTHQTGPEGKQVSRLLVEEGMNIDREFYVGITLDRSTSRNVLMVSTEGGMEIEKVAEETPDKLLKIQVDPLYGLQGFQAREAAFFLGLEGEQFRNAVTFIIALYNAYMTIDASLAEINPLVVTKEGRVLALDAKINFDGNALFR 229          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BORPE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella pertussis GN=sucC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 92/234 (39.32%), Postives = 134/234 (57.26%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + IHEYQG EL+ ++G+ VP+G+   SVDE   A + +       VVK+QI AGGRG G       GGV + +  +EV  L+ ++LG  LVT QTGPQG+ V ++ + E   +  E Y  I+ DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD +AA++  G+    A    A  + +KLYK + ++D +L EINPL  T    ++A DAK  F   A FR
Sbjct:    1 MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLGRSIDEVRQLSSEILGMQLVTHQTGPQGQKVRRLLIEEGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDIIALDAKFNFDSNALFR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BORPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella parapertussis GN=sucC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 92/234 (39.32%), Postives = 134/234 (57.26%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + IHEYQG EL+ ++G+ VP+G+   SVDE   A + +       VVK+QI AGGRG G       GGV + +  +EV  L+ ++LG  LVT QTGPQG+ V ++ + E   +  E Y  I+ DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD +AA++  G+    A    A  + +KLYK + ++D +L EINPL  T    ++A DAK  F   A FR
Sbjct:    1 MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLGRSIDEVRQLSSEILGMQLVTHQTGPQGQKVRRLLIEEGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDIIALDAKFNFDSNALFR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BORBR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella bronchiseptica GN=sucC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 92/234 (39.32%), Postives = 134/234 (57.26%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + IHEYQG EL+ ++G+ VP+G+   SVDE   A + +       VVK+QI AGGRG G       GGV + +  +EV  L+ ++LG  LVT QTGPQG+ V ++ + E   +  E Y  I+ DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD +AA++  G+    A    A  + +KLYK + ++D +L EINPL  T    ++A DAK  F   A FR
Sbjct:    1 MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLGRSIDEVRQLSSEILGMQLVTHQTGPQGQKVRRLLIEEGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAELARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDIIALDAKFNFDSNALFR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_ALKOO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 90/227 (39.65%), Postives = 129/227 (56.83%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF 840
            +NIHEYQ  EL+  YG+ VP+G  +  V + ++A   +  D    VVK+QI AGGRG         GGV I K   EVE  + ++LG+ LVT QTG +G++V  + + E   +  E Y A  LDR+ +   +I   +GG  IE++A   P+ I+K  ID   G+TD    +V   L    +  ND +E +K LY+ F E DC+LLEINPL  T   +++A DAK+ F
Sbjct:    1 MNIHEYQAKELLRDYGVPVPRGQVIYDVRDAQRAAWHIESDIA--VVKAQIHAGGRGKA-------GGVKIAKSITEVEQFSRELLGKTLVTHQTGQEGRVVKAILIEEGCEIYKEYYIAFTLDRENSKIALIASEEGGMDIEEVAANRPDKILKEIIDPLIGLTDFQGRRVCFNLNIDGSLINDTVELMKNLYRCFIEKDCSLLEINPLVITKNNRVMALDAKINF 218          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_MESSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.809e-36
Identity = 96/237 (40.51%), Postives = 132/237 (55.70%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ  EL+  YG  V +G+A+ +  E + A + +       VVKSQI AGGRG G FK      KGGV + K  EEV   A +MLG  LVTKQTGP+GK V+++Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  I+ + I    G+T++D  K+   L    A   D       LYK F E D +LLE+NPL      +L   DAKV F   A FR
Sbjct:    1 MNIHEYQAKELLRGYGAPVAQGVAIFTSGEAEAAAKKL--PGPLYVVKSQIHAGGRGKGKFKELSPDAKGGVRLAKSIEEVVANAKEMLGNTLVTKQTGPEGKQVNRLYIEDGADIARELYLSILIDRTVGRPAFVVSTEGGMDIEAVAEETPEKILTLAIAPERGVTNDDVTKLNAALKLDGAAAKDGETLFPILYKAFTEKDMSLLEVNPLIVMQNGRLRVLDAKVSFDNNALFR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_PELLD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelodictyon luteolum (strain DSM 273) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.669e-36
Identity = 86/236 (36.44%), Postives = 136/236 (57.63%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFP--DHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQG +++ K+G+ VPKG+   S +E K+A + +F   D   +V+K+QI AGGRG         GGV + K  EE  ++A +MLG  LVT QTGP+GK V ++ + E +++  E Y  I LDR T+  +++  ++GG  IE +AE+ P +++K+ +D   G+    A +    L  +     +A+  +  LY  +   D  L EINPL  T   +++A DAK+ F   A +R
Sbjct:    1 MNIHEYQGKDILRKFGVAVPKGIVAYSAEEAKQAAEQLFAEQDSPVVVIKAQIHAGGRGKA-------GGVKLAKSPEEAHEIASQMLGTTLVTHQTGPEGKEVRRLLVEEGMNIDREFYVGITLDRATSNNVLMISTEGGMEIEKVAEETPELLLKIQVDARFGLQGFQAREAAFFLGLEGEQFRNAVSFITALYNAYTSIDAALAEINPLVVTKEGRVLALDAKINFDSNALYR 229          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BURM1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.669e-36
Identity = 94/238 (39.50%), Postives = 141/238 (59.24%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + IHEYQG E++ K+G+ VP+G    SVDE  K  +++       VVK+QI AGGRG G       GGV + K  E+V + A ++LG  LVT QTGP+G+ V+++ + E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   ++VA DAK  F   A FR
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYANQILGMQLVTHQTGPEGQKVNRLLIEEGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDSQA----DDLATKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVVALDAKFNFDSNALFR 225          
The following BLAST results are available for this feature:
BLAST of CN184992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_RHOS42.151e-3639.66Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOS12.151e-3639.66Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLL22.151e-3637.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORPE2.151e-3639.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORPA2.151e-3639.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORBR2.151e-3639.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ALKOO2.151e-3639.65Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MESSB2.809e-3640.51Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PELLD3.669e-3636.44Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURM13.669e-3639.50Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184992 ID=CN184992; Name=CN184992; organism=Citrus sinensis; type=EST; length=861bp
GAGGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCACGTACAT
CTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATTGTTAA
ACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGCAACAG
CAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGTTGATGGC
CAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGTTGATG
AAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGAGCTGGTG
GTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTTAAGTC
TGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTTGAAGATT
TAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTGGTCCA
CAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCACTTGT
CAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTA
TAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAG
AAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAAT
CACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTG
CTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTT
TGTGAGAGTGACTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTC
TGGGTAGCAGTTGGTGGCTGCTGATGCTAAAGTGAAATTTTGATGATATG
CTGCCTTCCGT
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