CN184992

Overview
NameCN184992
Unique NameCN184992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:158..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BORA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella avium (strain 197N) GN=sucC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.669e-36
Identity = 90/234 (38.46%), Postives = 133/234 (56.84%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + IHEYQG EL+ ++G+ VP+G+   SV+E   A + +       VVK+QI AGGRG G       GGV + +  +EV  LA ++LG  LVT QTG QG+ V+++Y+ +   +  E Y +++ DR T    +I  S+GG  IE++A   P  I+   ID   G+TD  A KV D +         A++  KKLY+ + ++D +L+EINPL   S   ++A DAK  F   A FR
Sbjct:    1 MKIHEYQGKELLKQFGVPVPRGIPAFSVEEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLARSLDEVRQLASQILGMQLVTHQTGAQGQKVNRLYIEDGADIQKEYYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEYIDPIVGLTDAQAKKVADAIGMPADSTAQAVDVFKKLYQCYMDTDASLVEINPLNRDSKGNIIALDAKFNFDSNALFR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_JANMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Janthinobacterium sp. (strain Marseille) GN=sucC PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.792e-36
Identity = 96/238 (40.34%), Postives = 134/238 (56.30%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQG E++ KYG+  PKG    SVDE  +A + +    K  VVK+QI AGGRG G       GGV + K  +EV   A  +LG  LVT QTGP+G++V ++ + E   +  E+Y  +++DR +    ++  S+GG  IE +AE  P  I KV ID   G+ D +A    D +A K+     +I Q +     LYK F E+D +L EINPL  T   ++VA DAK  F   A +R
Sbjct:    1 MNIHEYQGKEILRKYGVTTPKGFPCFSVDEAVQAAEKL--GGKVWVVKAQIHAGGRGKG-------GGVKVAKSLDEVRKYANDILGMTLVTHQTGPEGRLVKRLLIEEGADIKKELYVGMVVDRGSQRVALMASSEGGMDIEHVAEHTPEKIHKVFIDPVKGLLDSEA----DDIARKIGVPEGSIGQARAFMQGLYKAFDETDASLAEINPLIVTGDDRIVALDAKFNFDSNAMYR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BURPP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=sucC PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.792e-36
Identity = 87/234 (37.18%), Postives = 139/234 (59.40%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + IHEYQG E++ K+G+ VP+G  V SVD+  KA +++       VVK+QI AGGRG G       GGV + K  ++V + + ++LG  LVT QTGP+G+ V+++ + E   +  E+Y  +++DR +   +++  S+GG  +E++AEK P +I K+ +D   G+ D +A ++   +    A    A   ++ LYK F E+D +L EINPL  T   +++A DAK  F   A FR
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLDQVREYSEQILGMQLVTHQTGPEGQKVNRLLIEEGADIKKELYVGLVIDRVSQKIVVMASSEGGMDVEEVAEKTPELIHKIAVDPATGLKDAEADELATKIGVPAASLPQARAILQGLYKAFWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_AGRRK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=sucC PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.792e-36
Identity = 95/237 (40.08%), Postives = 129/237 (54.43%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQ   L+  +G  V  G+A+ S DE + A + +       VVKSQI AGGRG G FK      KGGV + K  E+V   +  MLG  LVTKQTGP GK V+++Y+ +   +  E+Y +I++DR       +  ++GG  IE +A   P  I+ V ID   G+T  D+  + D L  + A R D  +    LYK F E D  LLE+NPL   +  +L   DAKV F   A FR
Sbjct:    1 MNIHEYQAKALLKSFGAPVADGVAIFSADEAEAAAKQL--PGPLYVVKSQIHAGGRGKGKFKELSPDAKGGVRLAKSIEDVVANSKDMLGNTLVTKQTGPAGKQVNRLYIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIETVAHDTPEKIITVAIDPAAGVTAADSTAISDALKLEGAAREDGAKLFPILYKAFVEKDMALLEVNPLIVMTNGRLRVLDAKVSFDGNALFR 235          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_ACIAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.792e-36
Identity = 91/234 (38.89%), Postives = 134/234 (57.26%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + IHEYQG E++  +G+ VP+G+   +V E  +A Q +       VVK+QI AGGRG G       GGV + K  ++V+ LAG +LG  L T QTGP+G+ V ++Y+ +   + NE+Y +++ DR T    +I  S+GG  IE++A   P+ IV   ID   GIT E   KV + +       + A++   KLYK + ++D +L+EINPL   S   L+A DAK  F   A FR
Sbjct:    1 MKIHEYQGKEILRSFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIDDVKKLAGDILGMQLKTHQTGPEGQKVRRLYIEDGADIKNELYVSLVTDRATQKVALIASSEGGMDIEEVAHSTPDKIVTEMIDPLTGITPEQGRKVAEAIGLSGKSVDQALDIFAKLYKCYMDTDASLVEINPLNCDSKGDLMALDAKFNFDANALFR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_CHLTE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobium tepidum GN=sucC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.258e-36
Identity = 87/236 (36.86%), Postives = 137/236 (58.05%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQG  ++ ++G+ VPKG+   S +E K+A + +F +     +VVK+QI AGGRG         GGV + K  EEV ++A KMLG  LVT QTGP+GK V ++ + E +++  E Y  I LDR T+  +++  ++GG  IE +AE+ P  ++K+ +D   G+    A K    L  +     + ++ ++ LY  +   D +L EINPL  T   +++A DAK+ F   A +R
Sbjct:    1 MNIHEYQGKGILKQFGVAVPKGIVAFSAEEAKQAAEQLFEEQSSPVVVVKAQIHAGGRGKA-------GGVKLAKSPEEVFEIAQKMLGATLVTHQTGPEGKEVRRLLIEEGMNIDKEFYLGITLDRTTSSNVLMVSTEGGMEIEKVAEETPEKLLKIHVDPVYGLQGFQARKAAFFLGLQGEQFRNGVKFIEALYNAYTTIDASLAEINPLVITKEGRVLALDAKINFDDNALYR 229          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_CHLT3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=sucC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.258e-36
Identity = 86/236 (36.44%), Postives = 139/236 (58.90%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQG E++  +G+ VPKG+   S +E KKA + +  +     +VVK+QI AGGRG         GGV +V+  +E  ++A +M+G  LVT QTGP+GK V ++ + E +++  E+Y  I LDR T+  +++  ++GG  IE +AE+ P  ++K+ I    G+    A +    L  +     +A++ +  LY  + ++DC+L EINPL  T   +++A DAK+ F   A FR
Sbjct:    1 MNIHEYQGKEILRGFGVTVPKGIVAFSAEEAKKAAETLLTEQGGGVVVVKAQIHAGGRGKA-------GGVKLVRSADEAFEVATQMIGTTLVTHQTGPEGKEVRRLLVEEGMNIEKELYLGITLDRATSCNVLMVSTEGGMEIEKVAEETPEKLLKIQIHPTLGLQPNQAREAAFFLGLEGEQFKNAVKFISALYNAYMKADCSLAEINPLVVTKEGRVIALDAKINFDDNALFR 229          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BURCM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=sucC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.258e-36
Identity = 93/238 (39.08%), Postives = 141/238 (59.24%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + IHEYQG E++ K+G+ VP+G    SVDE  K  +++       VVK+QI AGGRG G       GGV + K  E+V + A ++LG  LVT QTGP+G+ V+++ + E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   +++A DAK  F   A FR
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMIEEGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVIALDAKFNFDSNALFR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BURA4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia ambifaria (strain MC40-6) GN=sucC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.258e-36
Identity = 93/238 (39.08%), Postives = 141/238 (59.24%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            + IHEYQG E++ K+G+ VP+G    SVDE  K  +++       VVK+QI AGGRG G       GGV + K  E+V + A ++LG  LVT QTGP+G+ V+++ + E   +  E+Y ++++DR +   +++G S+GG  IE++AEK+P +I KV ++   G+ D  A    D LA K+     +I Q +     LYK F E+D +L EINPL  +   +++A DAK  F   A FR
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVREYANQILGMQLVTHQTGPEGQKVNRLMIEEGADIKQELYVSLVVDRISQKIVLMGSSEGGMDIEEVAEKHPELIHKVIVEPSTGLLDAQA----DDLAAKIGVPAASIPQARAILQGLYKAFWETDASLAEINPLNVSGDGKVIALDAKFNFDSNALFR 225          
BLAST of CN184992 vs. ExPASy Swiss-Prot
Match: SUCC_BACHD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus halodurans GN=sucC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.258e-36
Identity = 91/234 (38.89%), Postives = 134/234 (57.26%), Query Frame = 1
Query:  163 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG*QLVAADAKVKF**YAAFR 861
            +NIHEYQG EL+ +YG+ VP G    SVDE  +A +++       VVK+QI AGGRG         GGV + K  +EV   A ++LG+ LVT QTGP+GK V ++ + E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++   +         A++ +  LYK+F E DC++ EINPL  T   +++A DAK+ F   A +R
Sbjct:    1 MNIHEYQGKELLRQYGVAVPNGKVAFSVDEAVEAAKEL--GSNVCVVKAQIHAGGRGKA-------GGVKVAKNLDEVRTYADEILGKTLVTHQTGPEGKEVKRLLIEEGCDIQKEYYVGLVLDRATSRVVMMASEEGGTEIEEVAEKTPEKIFKEIIDPVVGLQGFQARRLAFNINIPKELVGQAVKFMLGLYKVFVEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYR 225          
The following BLAST results are available for this feature:
BLAST of CN184992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_BORA13.669e-3638.46Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_JANMA4.792e-3640.34Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURPP4.792e-3637.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AGRRK4.792e-3640.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIAC4.792e-3638.89Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLTE6.258e-3636.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLT36.258e-3636.44Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURCM6.258e-3639.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURA46.258e-3639.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACHD6.258e-3638.89Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006I09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184992 ID=CN184992; Name=CN184992; organism=Citrus sinensis; type=EST; length=861bp
GAGGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCACGTACAT
CTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATTGTTAA
ACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGCAACAG
CAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGTTGATGGC
CAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGTTGATG
AAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGAGCTGGTG
GTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTTAAGTC
TGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTTGAAGATT
TAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTGGTCCA
CAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCACTTGT
CAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCCCTA
TAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCTGAG
AAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAATGGAAT
CACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGCCCAAGGTTG
CTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAACTCTTT
TGTGAGAGTGACTGCACATTATTGGAAATCAATCCTCTAGCAGAGACTTC
TGGGTAGCAGTTGGTGGCTGCTGATGCTAAAGTGAAATTTTGATGATATG
CTGCCTTCCGT
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