CN184967

Overview
NameCN184967
Unique NameCN184967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_STAAW (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MW2) GN=sucD PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.484e-66
Identity = 127/216 (58.80%), Postives = 157/216 (72.69%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            ++I+EA +A+LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IK + T KPVV FI G TAPPG+RMGHAGAI+SGGKGTA++KIKTL   GV    +P++IGS ++E  K+ G+
Sbjct:   80 DSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGI 293          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_STAAS (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=sucD PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.484e-66
Identity = 127/216 (58.80%), Postives = 157/216 (72.69%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            ++I+EA +A+LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IK + T KPVV FI G TAPPG+RMGHAGAI+SGGKGTA++KIKTL   GV    +P++IGS ++E  K+ G+
Sbjct:   80 DSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGI 293          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_STAAR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=sucD PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.484e-66
Identity = 127/216 (58.80%), Postives = 157/216 (72.69%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            ++I+EA +A+LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IK + T KPVV FI G TAPPG+RMGHAGAI+SGGKGTA++KIKTL   GV    +P++IGS ++E  K+ G+
Sbjct:   80 DSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGI 293          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_STAAN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain N315) GN=sucD PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.484e-66
Identity = 127/216 (58.80%), Postives = 157/216 (72.69%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            ++I+EA +A+LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IK + T KPVV FI G TAPPG+RMGHAGAI+SGGKGTA++KIKTL   GV    +P++IGS ++E  K+ G+
Sbjct:   80 DSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGI 293          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_STAAM (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sucD PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.484e-66
Identity = 127/216 (58.80%), Postives = 157/216 (72.69%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            ++I+EA +A+LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IK + T KPVV FI G TAPPG+RMGHAGAI+SGGKGTA++KIKTL   GV    +P++IGS ++E  K+ G+
Sbjct:   80 DSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGI 293          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_STAAC (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain COL) GN=sucD PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.484e-66
Identity = 127/216 (58.80%), Postives = 157/216 (72.69%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            ++I+EA +A+LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IK + T KPVV FI G TAPPG+RMGHAGAI+SGGKGTA++KIKTL   GV    +P++IGS ++E  K+ G+
Sbjct:   80 DSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDETKAVVMIGEIGGTAEEEAAEWIKANMT-KPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAEEKIKTLNSCGVKTAATPSEIGSTLIEAAKEAGI 293          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.648e-66
Identity = 125/216 (57.87%), Postives = 158/216 (73.15%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            ++I+EA +A+LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IKE+   KPVV FI G TAPPG+RMGHAGAI+SGGKGTA +KIKTL + GV   ++P++IG+ +++  K+ G+
Sbjct:   80 DSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDSETKAVVMIGEIGGTAEEEAAQWIKEN-MNKPVVGFIGGQTAPPGKRMGHAGAIISGGKGTASEKIKTLNDCGVETADTPSEIGTTLIDAAKKAGI 293          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.988e-66
Identity = 124/216 (57.41%), Postives = 158/216 (73.15%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 648
            ++I+EA +A+LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T               +AA  IKE+   KPV+ FI G TAPPG+RMGHAGAI+SGGKGTA +KIKTL + GV   ++P++IG+ +++  K+ G+
Sbjct:   80 DSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDSETKAVVMIGEIGGTAEEEAAQWIKEN-MNKPVIGFIGGQTAPPGKRMGHAGAIISGGKGTASEKIKTLNDCGVETADTPSEIGTTLIDAAKKAGI 293          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_HAEIN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus influenzae GN=sucD PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.474e-65
Identity = 127/212 (59.91%), Postives = 159/212 (75.00%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 636
            +AI+EA++A + L+VCITEGIP  DM++VK  LN ++   +IGPNCPG+I P ECKIGIMP +IHK G+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G++F+D LE+F  DP+T               +AA  IK++ T KPVVA+IAG+TAP G+RMGHAGAI+SGGKGTA +KI  L  AGVT V+S A+IG A+ ++ K
Sbjct:   80 DAIIEAIDAGIQLIVCITEGIPTLDMLKVKQKLN-ETGVVMIGPNCPGVITPDECKIGIMPAHIHKKGKVGIVSRSGTLTYEAVKQTTDEGFGQSTCVGIGGDPIPGSSFIDILERFQQDPETEAIVMIGEIGGSAEEEAAIFIKDNVT-KPVVAYIAGITAPKGKRMGHAGAIISGGKGTAVEKIAALEAAGVTCVKSLAEIGEALRKLLK 289          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli (strain K12) GN=sucD PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.884e-64
Identity = 127/212 (59.91%), Postives = 153/212 (72.17%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 636
            ++I+EA++A + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT               +AAA IKE  T KPVV +IAG+TAP G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct:   80 DSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289          
The following BLAST results are available for this feature:
BLAST of CN184967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SUCD_STAAW4.484e-6658.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAS4.484e-6658.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAR4.484e-6658.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAN4.484e-6658.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAM4.484e-6658.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAC4.484e-6658.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAEQ7.648e-6657.87Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAES9.988e-6657.41Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_HAEIN6.474e-6559.91Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOLI1.884e-6459.91Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184967 ID=CN184967; Name=CN184967; organism=Citrus sinensis; type=EST; length=736bp
GAGGCTATCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTAT
CACCGAAGGAATCCCTCAACACGATATGGTGCGAGTGAAAGCTGCTCTAA
ACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATC
AAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAAACC
TGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAGCAG
TTTTTCAAACAACTGTAGTTGGCCTTGGACAATCAACCTGTGTAGGTATA
GGTGGGGATCCTTTTAATGGGACAAACTTTGTTGATTGCCTTGAAAAGTT
CCTAGTTGATCCCCAGACAGAAGGTATTATTCTAATAGGAGAGATCGGTG
GGACTGCAGAAGAGGATGCCGCTGCCTTGATAAAGGAAAGTGGGACTGAG
AAGCCCGTTGTTGCTTTTATTGCTGGACTAACAGCTCCCCCTGGCCGCCG
TATGGGTCATGCTGGAGCTATCGTCTCTGGTGGGAAGGGCACGGCTCAAG
ACAAAATTAAGACCCTCAGGGAAGCCGGAGTGACAGTGGTAGAGTCTCCC
GCAAAAATTGGCTCTGCTATGCTTGAGGTTTTCAAGCAACGTGGCCTGGC
AAGTTAGTTTTGATAAAAGAAACACTAGATTTCTATACAGCTTTTTTGCA
CAATGTCAAAAAATTGTGCTTCTCAGCATTTTTATT
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