CN184967

Overview
NameCN184967
Unique NameCN184967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6 GN=sucD PE=3 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.884e-64
Identity = 127/212 (59.91%), Postives = 153/212 (72.17%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 636
            ++I+EA++A + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT               +AAA IKE  T KPVV +IAG+TAP G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct:   80 DSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 GN=sucD PE=3 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.884e-64
Identity = 127/212 (59.91%), Postives = 153/212 (72.17%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 636
            ++I+EA++A + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT               +AAA IKE  T KPVV +IAG+TAP G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct:   80 DSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_PSEAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas aeruginosa GN=sucD PE=3 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 5.481e-64
Identity = 126/210 (60.00%), Postives = 151/210 (71.90%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEV 630
            ++I+EA    + L+VCITEGIP  DM+  K   +     RLIGPNCPG+I PGECKIGIMPG+IH PG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D L+ F  DPQT               +AAA IK + T KPVV++IAG+TAPPG+RMGHAGAI+SGGKGTA +K   L++AGV  V S A IG A+ E+
Sbjct:   80 DSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCDELG-VRLIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDAGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEAAAFIKANVT-KPVVSYIAGVTAPPGKRMGHAGAIISGGKGTADEKFAALQDAGVKTVRSLADIGKALAEL 287          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.155e-60
Identity = 117/213 (54.93%), Postives = 150/213 (70.42%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKA-ALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 636
            +AI+EA++A ++LVVCITEGIP  DM+ VK   L      +L+GPNCPG+I PGE K+GIMPG+I K G++GIVSRSGTLTYEA +Q T  GLGQST VGIGGDP +G    D +E F  DP+T               +AA  I E   +KPV A+IAG+TAPPG+RMGHAGAI+ GGKGTA+ K++ L +AG  V+E+PAKIG  + ++ K
Sbjct:   80 DAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQLTKYGLGQSTAVGIGGDPVHGLTHRDVIEMFNKDPETEAILMIGEIGGTEEEEAAEYI-EKEVDKPVFAYIAGITAPPGKRMGHAGAIIMGGKGTAKAKMEALEKAGAYVIENPAKIGETVAKILK 291          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA2_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.666e-58
Identity = 119/217 (54.84%), Postives = 147/217 (67.74%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES--GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRG 645
            A +EA EA + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I + G++GIVSRSGTLTYEA + TT  GLGQST VGIGGDPF G    D +++F  DPQT               DAA  I ++    EKPVVAFIAG TAPPG+RMGHAGAIVSGGKGTA+ K K L  AGV +   P  +G  + E  K+ G
Sbjct:   92 ACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFRNGKIGIVSRSGTLTYEAAYATTQAGLGQSTVVGIGGDPFAGQLHTDVIKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVAFIAGATAPPGKRMGHAGAIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFEEMKRLG 307          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA3_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.308e-57
Identity = 118/217 (54.38%), Postives = 147/217 (67.74%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES--GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRG 645
            A +EA +A + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I   G++GIVSRSGTLTYEA + TT+ GLGQST VGIGGDPF G    D +++F  DPQT               DAA  I ++    EKPVVAFIAG TAPPG+RMGHAGAIVSGGKGTA+ K K L  AGV +   P  +G  + E  K+ G
Sbjct:   92 ACIEAAQAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYATTLAGLGQSTVVGIGGDPFAGQLHTDVVKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVAFIAGATAPPGKRMGHAGAIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFEEMKRMG 307          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA1_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS1 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.969e-57
Identity = 118/217 (54.38%), Postives = 146/217 (67.28%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES--GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRG 645
            A +EA EA + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I   G++GIVSRSGTLTYEA + TT+ GLGQST VGIGGDPF G    D +++F  DPQT               DAA  I ++    EKPVVA IAG TAPPG+RMGHAGAIVSGGKGTA+ K K L  AGV +   P  +G  + E  K+ G
Sbjct:   92 ACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYATTLAGLGQSTVVGIGGDPFAGQLHTDVVKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVASIAGATAPPGKRMGHAGAIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFEEMKRMG 307          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 4.813e-52
Identity = 107/213 (50.23%), Postives = 141/213 (66.20%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEV 630
            +AIMEA +A L LV  IT+GIP  DM+RVK  L R   + +T ++GPNC GII PG+  +GIMPG+I+ PG+VG++SRSGTL YEA  Q   +G+G ST VGIGGDP NG++F+D L  F  DP+T               +A+A IKE+   KPV+ F+AGLTAP GRRMGHAGAI+S    +A +K + +R  G+TV   P   GS + +V
Sbjct:   80 DAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQMKELGIGISTSVGIGGDPINGSSFLDHLALFEQDPETEAVLMIGEIGGPQEAEASAWIKEN-FSKPVIGFVAGLTAPKGRRMGHAGAIISATGDSAAEKAEIMRSYGLTVAPDPGSFGSTVADV 291          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.285e-52
Identity = 107/210 (50.95%), Postives = 137/210 (65.24%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEV 630
            +A+MEA +A + ++VCITEGIP HD +++   +     T LIGPNCPGII PG+  +GIMP  I KPG VGIVSRSGTLTY+  +  T +GLGQST VGIGGD   GT+FV+ L  F  D +T                AA  I+E    KPVV ++AGLTAPPG+RMGHAGAI+ GG GTA+ KIK L  AG  V ++P ++   + E+
Sbjct:   80 DAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLTKLGLGQSTVVGIGGDRIIGTDFVEVLRLFEDDKETKAVVLVGEIGGRDEEVAAEFIRE--MSKPVVGYVAGLTAPPGKRMGHAGAIIEGGVGTAESKIKALEAAGARVGKTPMEVAELVAEI 286          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.076e-51
Identity = 110/217 (50.69%), Postives = 138/217 (63.59%), Query Frame = 1
Query:    4 AIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEK----PVVAFIAGLTA--PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVF 633
            AI E++EAE+ L VCITEGIPQHDM+ +   L  Q KTRL+GPNCPGII P  + +IGI P  I + G++GI+SRSGTLTYEAV QTT   LGQS  +G+GGD F GT+F+D L+ FL D  T               +AA  +KE    +    PV +FIAG  A    G RMGH+GAIV G    A+ K + LR+ GV VVESP  +G A+L+ F
Sbjct:  109 AIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQTTKTDLGQSLVIGMGGDAFPGTDFIDALKLFLEDETTEGIIMLGEIGGKAEIEAAQFLKEYNFSRSKPMPVASFIAGTVAGQMKGVRMGHSGAIVEGSGTDAESKKQALRDVGVAVVESPGYLGQALLDQF 325          
The following BLAST results are available for this feature:
BLAST of CN184967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SUCD_ECOL61.884e-6459.91Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECO571.884e-6459.91Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_PSEAE5.481e-6460.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_AQUAE2.155e-6054.93Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA2_TRIVA7.666e-5854.84Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA3_TRIVA1.308e-5754.38Succinyl-CoA ligase [GDP-forming] subunit alpha-3,... [more]
SUCA1_TRIVA4.969e-5754.38Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
MTKB_METEA4.813e-5250.23Malate--CoA ligase subunit alpha OS=Methylobacteri... [more]
SUCD2_ARCFU6.285e-5250.95Succinyl-CoA ligase [ADP-forming] subunit alpha 2 ... [more]
SUCA_YEAST9.076e-5150.69Succinyl-CoA ligase [ADP-forming] subunit alpha, m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184967 ID=CN184967; Name=CN184967; organism=Citrus sinensis; type=EST; length=736bp
GAGGCTATCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTAT
CACCGAAGGAATCCCTCAACACGATATGGTGCGAGTGAAAGCTGCTCTAA
ACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATC
AAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAAACC
TGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAGCAG
TTTTTCAAACAACTGTAGTTGGCCTTGGACAATCAACCTGTGTAGGTATA
GGTGGGGATCCTTTTAATGGGACAAACTTTGTTGATTGCCTTGAAAAGTT
CCTAGTTGATCCCCAGACAGAAGGTATTATTCTAATAGGAGAGATCGGTG
GGACTGCAGAAGAGGATGCCGCTGCCTTGATAAAGGAAAGTGGGACTGAG
AAGCCCGTTGTTGCTTTTATTGCTGGACTAACAGCTCCCCCTGGCCGCCG
TATGGGTCATGCTGGAGCTATCGTCTCTGGTGGGAAGGGCACGGCTCAAG
ACAAAATTAAGACCCTCAGGGAAGCCGGAGTGACAGTGGTAGAGTCTCCC
GCAAAAATTGGCTCTGCTATGCTTGAGGTTTTCAAGCAACGTGGCCTGGC
AAGTTAGTTTTGATAAAAGAAACACTAGATTTCTATACAGCTTTTTTGCA
CAATGTCAAAAAATTGTGCTTCTCAGCATTTTTATT
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