CN184967

Overview
NameCN184967
Unique NameCN184967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.472e-48
Identity = 107/203 (52.71%), Postives = 129/203 (63.55%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 609
            +A  E+++  LDLVV ITE IP HD +++    +R  KT +IGPN PGII PG  K+GIMP +I   G +GIVSRSGTLTYE   Q T  G GQSTCVGIGGDP  G  FVD LE+F  DP T                AA+ I++    KPV AFI+G TAPPG+RMGHAGAI+ GG GTA  K + L  AG  VV+ P+ I
Sbjct:   84 DAAFESIK-HLDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQLTEAGFGQSTCVGIGGDPVTGLGFVDVLERFEDDPGTDAVVLIGEIGGDAEERAASYIEQ--MSKPVFAFISGATAPPGKRMGHAGAIIEGGTGTASSKREALEAAGAVVVDRPSAI 282          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.216e-48
Identity = 101/199 (50.75%), Postives = 127/199 (63.82%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVES 597
            +AI EA +A L LVVC+TEGIP +D + +   L R+ K+ L+GPNCPG+I PG  K+G++P      G +G+VSRSGTLTY+     T  G+GQST VGIGGDP  G  FVD L+ F  D +T                AA  IK+    KPVVAFIAG TAPPG+RMGHAGAI+ G  GTA+ K+  LR+AG  V E+
Sbjct:   83 DAIFEAFDAGLRLVVCVTEGIPLYDEMLIHRKL-REVKSMLLGPNCPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQICENLTKAGIGQSTVVGIGGDPMPGLTFVDVLKMFEEDEETKAVLLVGEIGGTAEEKAAEFIKQ--MSKPVVAFIAGRTAPPGKRMGHAGAIIEGSTGTAEAKMAALRDAGARVAET 278          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_THETH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus thermophilus GN=sucD PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.791e-46
Identity = 100/199 (50.25%), Postives = 125/199 (62.81%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVES 597
            +A +EA  A + L+V ITEGIP  DMVR    +     +RLIG NCPGII   E KIGIMPG++ K GRVGI+SRSGTLTYEA    +  GLG +T VGIGGDP  GT F D L  F  DP+T               +AAA +K+   +KPVV FI G +AP G+RMGHAGAI+ G  GT + K++   EAG+ V ++
Sbjct:   79 DAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALG-SRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDH-MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADT 275          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_MYCBO (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium bovis GN=sucD PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.075e-43
Identity = 100/211 (47.39%), Postives = 128/211 (60.66%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAA-LNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEV 630
            +AI+EA++AE+ L+V ITEGIP  D     A  L    KTR+IGPNCPGII PG+   GI P  I  PG +G+VS+SGTLTY+ +F+  +  LG ST +GIGGDP  GT  +D +E F  DP T                AA  IK +   KPVV ++AG TAP G+ MGHAGAIVSG  GTA  K + L  AGV V ++P+   +   E+
Sbjct:   92 DAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYNLEAGHKTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFE--LRDLGFSTAIGIGGDPVIGTTHIDAIEAFEKDPDTKLIVMIGEIGGDAEERAADFIK-TNVSKPVVGYVAGFTAPEGKTMGHAGAIVSGSSGTAAAKQEALEAAGVKVGKTPSATAALAREI 299          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_MYCTU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium tuberculosis GN=sucD PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.404e-43
Identity = 100/211 (47.39%), Postives = 128/211 (60.66%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAA-LNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEV 630
            +AI+EA++AE+ L+V ITEGIP  D     A  L    KTR+IGPNCPGII PG+   GI P  I  PG +G+VS+SGTLTY+ +F+  +  LG ST +GIGGDP  GT  +D +E F  DP T                AA  IK +   KPVV ++AG TAP G+ MGHAGAIVSG  GTA  K + L  AGV V ++P+   +   E+
Sbjct:   92 DAIIEAIDAEIPLLVVITEGIPVQDTAYAWAYNLEAGHKTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFE--LRDLGFSTAIGIGGDPVIGTTHIDAIEAFERDPDTKLIVMIGEIGGDAEERAADFIK-TNVSKPVVGYVAGFTAPEGKTMGHAGAIVSGSSGTAAAKQEALEAAGVKVGKTPSATAALAREI 299          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: SUCD_METJA (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanocaldococcus jannaschii GN=sucD PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40
Identity = 91/203 (44.83%), Postives = 122/203 (60.10%), Query Frame = 1
Query:    1 EAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 609
            +A+ EA++A ++L+V ITE IP HD +            ++IGPN PGI  P   K+GI+P  + K G VG+VSRSGTLTYE   Q    G G STCVGIGGDP  G  + + L+ F  D +T               +AA  I++   +KPV+ +IAG +AP G+RMGHAGAIV  GKGTA+ K+K L EAG  V ++ + I
Sbjct:   85 DAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGVKIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK--MKKPVIGYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNISDI 284          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: ACL1_SCHPO (Probable ATP-citrate synthase subunit 1 OS=Schizosaccharomyces pombe GN=SPBC1703.07 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 65/223 (29.15%), Postives = 106/223 (47.53%), Query Frame = 1
Query:   10 MEAME-AELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 636
            ME ME  ++  +  I EG+P+    R     +++    +IGP   G IKPG  KIG        I+   +++PG V  VS+SG ++ E   +   T  G+ +   + IGGD + GT F+D L +F  DP                      +K    +KP+VA+  G  +   +   + GHAG+  +    TA  K + +REAG+ V E+  K+ + + EV++
Sbjct:  103 MELMEFPQIRCIAIIAEGVPER-RAREILVTSKEKNVVIIGPATVGGIKPGCFKIGNTGGMMDNIVASKLYRPGSVAYVSKSGGMSNELNNIISHTTDGVYEG--IAIGGDRYPGTTFIDHLIRFEADPACKLMVLLGEVGGVEEYRVIEAVKNGTIKKPIVAWAIGTCSSMFKTEVQFGHAGSFANSELETAVAKNQAMREAGIYVPETFEKLPALLQEVYE 322          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: ACL1_SORMA (ATP-citrate synthase subunit 1 OS=Sordaria macrospora GN=ACL1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.238e-15
Identity = 66/222 (29.73%), Postives = 105/222 (47.30%), Query Frame = 1
Query:   10 MEAME-AELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVF 633
            ME ME  ++  +  I EG+P+    R  A + ++    +IGP   G IKPG  KIG        I+   +++ G VG VS+SG ++ E   +   T  G+ +   V IGGD + GT F+D L ++  DP                      +K+    KP+VA+  G  A   +   + GHAGA  +    TA  K K++REAG  V ++   + + + +V+
Sbjct:  143 MELMEHPQIKTIAIIAEGVPER-RAREIAYVAKKKGITIIGPATVGGIKPGCFKIGNTGGMMDNIVASKLYRKGSVGYVSKSGGMSNELNNIISQTTDGVYEG--VAIGGDRYPGTTFIDHLLRYQADPACKILVLLGEVGGVEEYKVIEAVKQGIITKPIVAWAIGTCASMFKTEVQFGHAGAFANSQLETAATKNKSMREAGFYVPDTFEDMPALLKQVY 361          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: ACL1_NEUCR (Probable ATP-citrate synthase subunit 1 OS=Neurospora crassa GN=B14D6.310 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.238e-15
Identity = 66/222 (29.73%), Postives = 105/222 (47.30%), Query Frame = 1
Query:   10 MEAME-AELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVF 633
            ME ME  ++  +  I EG+P+    R  A + ++    +IGP   G IKPG  KIG        I+   +++ G VG VS+SG ++ E   +   T  G+ +   V IGGD + GT F+D L ++  DP                      +K+    KP+VA+  G  A   +   + GHAGA  +    TA  K K++REAG  V ++   + + + +V+
Sbjct:  139 MELMEYPQIKTIAIIAEGVPER-RAREIAYVAKKKGITIIGPATVGGIKPGCFKIGNTGGMMDNIVASKLYRKGSVGYVSKSGGMSNELNNIISQTTDGVYEG--VAIGGDRYPGTTFIDHLLRYQADPDCKILVLLGEVGGVEEYKVIDAVKQGIITKPIVAWAIGTCASMFKTEVQFGHAGAFANSQLETAATKNKSMREAGFYVPDTFEDMPALLKQVY 357          
BLAST of CN184967 vs. ExPASy Swiss-Prot
Match: ACLY_RAT (ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 69/226 (30.53%), Postives = 102/226 (45.13%), Query Frame = 1
Query:    1 EAIMEAME-AELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 636
            ++ ME M  A++  +  I EGIP+  + R       Q    +IGP   G IKPG  KIG        I+   +++PG V  VSRSG ++ E   +   T  G+ +   V IGGD + G+ F+D + ++   P                      IKE    KPVV +  G  A       + GHAGA  +    TA  K + L+EAGV V  S  ++G  +  V++
Sbjct:  579 DSTMETMNYAQIRTIAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEG--VAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPVVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 801          
The following BLAST results are available for this feature:
BLAST of CN184967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SUCD_METTH2.472e-4852.71Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD1_ARCFU4.216e-4850.75Succinyl-CoA ligase [ADP-forming] subunit alpha 1 ... [more]
SUCD_THETH8.791e-4650.25Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_MYCBO1.075e-4347.39Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_MYCTU1.404e-4347.39Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_METJA5.519e-4044.83Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
ACL1_SCHPO1.910e-1629.15Probable ATP-citrate synthase subunit 1 OS=Schizos... [more]
ACL1_SORMA1.238e-1529.73ATP-citrate synthase subunit 1 OS=Sordaria macrosp... [more]
ACL1_NEUCR1.238e-1529.73Probable ATP-citrate synthase subunit 1 OS=Neurosp... [more]
ACLY_RAT2.335e-1430.53ATP-citrate synthase OS=Rattus norvegicus GN=Acly ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184967 ID=CN184967; Name=CN184967; organism=Citrus sinensis; type=EST; length=736bp
GAGGCTATCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTAT
CACCGAAGGAATCCCTCAACACGATATGGTGCGAGTGAAAGCTGCTCTAA
ACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATC
AAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAAACC
TGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAGCAG
TTTTTCAAACAACTGTAGTTGGCCTTGGACAATCAACCTGTGTAGGTATA
GGTGGGGATCCTTTTAATGGGACAAACTTTGTTGATTGCCTTGAAAAGTT
CCTAGTTGATCCCCAGACAGAAGGTATTATTCTAATAGGAGAGATCGGTG
GGACTGCAGAAGAGGATGCCGCTGCCTTGATAAAGGAAAGTGGGACTGAG
AAGCCCGTTGTTGCTTTTATTGCTGGACTAACAGCTCCCCCTGGCCGCCG
TATGGGTCATGCTGGAGCTATCGTCTCTGGTGGGAAGGGCACGGCTCAAG
ACAAAATTAAGACCCTCAGGGAAGCCGGAGTGACAGTGGTAGAGTCTCCC
GCAAAAATTGGCTCTGCTATGCTTGAGGTTTTCAAGCAACGTGGCCTGGC
AAGTTAGTTTTGATAAAAGAAACACTAGATTTCTATACAGCTTTTTTGCA
CAATGTCAAAAAATTGTGCTTCTCAGCATTTTTATT
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