CN184966

Overview
NameCN184966
Unique NameCN184966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_PARD8 (Phosphoserine aminotransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=serC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.069e-17
Identity = 48/123 (39.02%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  281 NFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKILQPTSDLVWEKAEKN 649
            NF AGP+ L E  +    + + N+ G G+S++E+SHR KEF ++ ++A + ++ LL++P  Y V+F+ GGA+ QF  VP NL   N    Y+ TG+W+  A KEA+  L    D+V    +KN
Sbjct:    5 NFYAGPSILSEYTIKNTAAAVENFAGMGLSLLEISHRSKEFVAVNDEARALIKELLDVPAGYEVVFMGGGASMQFCMVPYNLL--NKKASYLDTGTWASNAIKEAK--LFGEVDVVASSKDKN 123          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_FLAJ1 (Phosphoserine aminotransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=serC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.069e-17
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  281 NFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIP-QEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 598
            N++AGP+ LP++V  KA   + N+  SG+S++E+SHR K+F +++++A S    LL +  + Y  LFLQGGA+T F   P NL   N    Y+ +G+W+  A KEA+
Sbjct:    5 NYSAGPSILPQEVFEKASKAVLNFNDSGLSILEISHRSKDFVAVMDEARSLALELLGLQGKGYQALFLQGGASTAFLMAPYNLMKENGKAAYLDSGTWATAAIKEAK 111          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_AZOPC (Phosphoserine aminotransferase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=serC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.111e-17
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  278 FNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 598
            +NF  GP+ LP++ +      + N+  SG+S+ME+SHR K+F+ +I +     + LL+IP+ YSVLFL GGA+ QF  VP NL        Y+ +G+W+ KA KEA+
Sbjct:    4 YNFNPGPSILPQETVNNTARAITNFSNSGLSLMEISHRSKDFQLMINETIVLFKELLSIPEGYSVLFLGGGASLQFCMVPYNLL--ETKAAYLNSGAWASKAIKEAR 108          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_LEUMM (Phosphoserine aminotransferase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=serC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.063e-17
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  278 FNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKI 604
            +NF+AGP  LP  VL K ++E      + MS++E+SHR  +F+ II  AE  LR L+NI  +Y V F+QGG +TQF  +PLN     + +  + +G+++ KA + A  I
Sbjct:    4 YNFSAGPGVLPTPVLTKIKNEFIKNEFTHMSIIEISHRSTQFEEIINSAEERLRDLMNISDDYGVAFIQGGGSTQFEMLPLNFANNKNRIAVLDSGNFASKAAQAAVTI 112          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_FLAPJ (Phosphoserine aminotransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=serC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.016e-16
Identity = 42/107 (39.25%), Postives = 69/107 (64.49%), Query Frame = 2
Query:  281 NFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIP-QEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQ 598
            N++AGP  LP++V  K+   + ++  SG+S++E+SHR K+F +++E+A + +  LL +  + Y  LFL GGA+ +F  VP NL   N    Y+ TG+W+  A KEA+
Sbjct:    5 NYSAGPCILPQEVFEKSAQAILDFNHSGLSLLEISHRSKDFVAVMEEARALVLELLGLKGKGYQALFLAGGASLEFLMVPYNLMKENGKAAYLDTGTWASGAIKEAK 111          
The following BLAST results are available for this feature:
BLAST of CN184966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_PARD81.069e-1739.02Phosphoserine aminotransferase OS=Parabacteroides ... [more]
SERC_FLAJ11.069e-1741.12Phosphoserine aminotransferase OS=Flavobacterium j... [more]
SERC_AZOPC3.111e-1742.06Phosphoserine aminotransferase OS=Azobacteroides p... [more]
SERC_LEUMM4.063e-1740.37Phosphoserine aminotransferase OS=Leuconostoc mese... [more]
SERC_FLAPJ2.016e-1639.25Phosphoserine aminotransferase OS=Flavobacterium p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184966 ID=CN184966; Name=CN184966; organism=Citrus sinensis; type=EST; length=652bp
GAGGAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTCTCTCTTTCAACTA
GCAGCTGCTAAGCCATGGCAACGACGACATCATCACCTCACTCACTGTTT
CTCCAGAACCGTAATAGCCACCCACTCAATAAAAACAATCTCGCATCTTT
CACCAACCTTAAAAAGATCAATTTTTTTAACACCAAAAGAGCCATTTCAG
TCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCGAACGGCGGCCCAG
ATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCGCTGCGGGCCCCGC
TAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCGGAGCTTTACAACT
GGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCATAGAGGTAAAGAA
TTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTAGAGCCCTCTTGAA
TATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGCGGCGCTACGACAC
AGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAATGACCCGGTCGAT
TATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTAAAGAAGCGCAAAA
AATTTTGCAACCCACAAGTGATTTGGTCTGGGAAAAAGCTGAAAAGAACA
CA
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