CN184966

Overview
NameCN184966
Unique NameCN184966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_MANSM (Phosphoserine aminotransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=serC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 62/112 (55.36%), Postives = 76/112 (67.86%), Query Frame = 2
Query:  275 VFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKILQ 610
            VFNF+AGPA +P  VL KAQ EL NW+G G SVME+SHRGK F  +I +A+ D R L NIP+ Y +LFLQGGA  QFAA+P+NL        Y+ TG WS  A KEA+   +
Sbjct:    4 VFNFSAGPAMMPPAVLKKAQEELLNWQGQGTSVMEVSHRGKYFMELITQADKDFRELYNIPENYKILFLQGGARGQFAAIPMNLANNKGKALYLNTGHWSATAAKEARNFTE 115          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_CAEEL (Probable phosphoserine aminotransferase OS=Caenorhabditis elegans GN=F26H9.5 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 65/132 (49.24%), Postives = 88/132 (66.67%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEA------QKILQPTSDLVWEKAEKN 649
            R  NFAAGPA LPE+VLLK Q E  N+   G+SV+EMSHR KEF +++ +  S +R L+N+P  + +LF+QGG T QFAA+PLNL   ++  DYIVTG+WS KA  EA      +K+ QP+   V    ++N
Sbjct:    6 RKINFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEFGALLNETISLIRELMNVPDNFEILFMQGGGTGQFAAIPLNLKGDHEHADYIVTGAWSSKAADEAGKYINVKKVFQPSKPYVTVPDQEN 137          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_XENNE (Phosphoserine aminotransferase OS=Xenorhabdus nematophilus GN=serC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.627e-29
Identity = 63/115 (54.78%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  269 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKILQP 613
            ++V+NF+AGPA LP +VL +A+ EL NW G G SVME+SHR KEF ++  +AE DLR LL IP+ Y+VLF  GGA  QF+A+P NL       DYIV+G WS+ A KEA+K   P
Sbjct:    2 NQVYNFSAGPAMLPAEVLRRAEQELCNWHGLGTSVMEISHRSKEFIAVAAEAEKDLRDLLAIPENYNVLFCHGGARGQFSALPQNLLGDKSTADYIVSGYWSECAAKEAEKYCTP 116          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_LEGPL (Phosphoserine aminotransferase OS=Legionella pneumophila (strain Lens) GN=serC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.627e-29
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEA 595
            RVFNF AGPA LPE++L +AQ E  NWR +GMS++E+ HR  E  S++  AE  LR LLNIP+ Y VLFL G A TQFA +P+NL  P D   Y +TG WS  A+ EA
Sbjct:    4 RVFNFGAGPAMLPEEILKEAQEEFLNWRNTGMSILEIGHRTPEIISLLSTAEQSLRELLNIPKNYHVLFLGGAARTQFAMIPMNLLRPGDDAAYFITGIWSKMAYHEA 111          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_IDILO (Phosphoserine aminotransferase OS=Idiomarina loihiensis GN=serC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.627e-29
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKIL 607
            ++FNF+AGPA LP  VL +AQ EL NW G G+SVME+SHR   +  +  +AE DLR LLN+P +Y VLFLQGG   QF+AVP N+ +P+  VDY+ TG WS  A +EA+K +
Sbjct:    3 QLFNFSAGPAMLPVDVLKQAQEELLNWNGQGVSVMEISHRDPVYVHMAREAEQDLRDLLNVPDDYEVLFLQGGGRGQFSAVPQNIASPDATVDYLDTGIWSGFAIREAEKFV 114          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_BACHD (Phosphoserine aminotransferase OS=Bacillus halodurans GN=serC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.627e-29
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKI 604
            R +NF AGP+ LP +VL KAQSEL ++  +GMSVME+SHR KE++++   A   LR LLNIP++Y VLFLQGGA+ QFA +PLN        +YI+TGSWS+KA KEA+ I
Sbjct:    3 RAYNFNAGPSALPTEVLEKAQSELLDFENTGMSVMELSHRSKEYENVHHTAAQLLRDLLNIPEDYDVLFLQGGASLQFAMIPLNFLDEGKVANYILTGSWSEKALKEAKFI 113          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_SHISS (Phosphoserine aminotransferase OS=Shigella sonnei (strain Ss046) GN=serC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKILQP 613
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K   P
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTP 116          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_SHIFL (Phosphoserine aminotransferase OS=Shigella flexneri GN=serC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKILQP 613
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K   P
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTP 116          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_SHIBS (Phosphoserine aminotransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=serC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKILQP 613
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K   P
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTP 116          
BLAST of CN184966 vs. ExPASy Swiss-Prot
Match: SERC_ECOSM (Phosphoserine aminotransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=serC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = 2
Query:  272 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKILQP 613
            ++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF  + E+AE D R LLN+P  Y VLF  GG   QFAAVPLN+       DY+  G W+  A KEA+K   P
Sbjct:    3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTP 116          
The following BLAST results are available for this feature:
BLAST of CN184966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_MANSM3.543e-2955.36Phosphoserine aminotransferase OS=Mannheimia succi... [more]
SERC_CAEEL3.543e-2949.24Probable phosphoserine aminotransferase OS=Caenorh... [more]
SERC_XENNE4.627e-2954.78Phosphoserine aminotransferase OS=Xenorhabdus nema... [more]
SERC_LEGPL4.627e-2955.56Phosphoserine aminotransferase OS=Legionella pneum... [more]
SERC_IDILO4.627e-2954.46Phosphoserine aminotransferase OS=Idiomarina loihi... [more]
SERC_BACHD4.627e-2956.76Phosphoserine aminotransferase OS=Bacillus halodur... [more]
SERC_SHISS6.043e-2953.51Phosphoserine aminotransferase OS=Shigella sonnei ... [more]
SERC_SHIFL6.043e-2953.51Phosphoserine aminotransferase OS=Shigella flexner... [more]
SERC_SHIBS6.043e-2953.51Phosphoserine aminotransferase OS=Shigella boydii ... [more]
SERC_ECOSM6.043e-2953.51Phosphoserine aminotransferase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006H10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184966 ID=CN184966; Name=CN184966; organism=Citrus sinensis; type=EST; length=652bp
GAGGAAAAAAAGGAAAAGAGAAATAAAGGCACTTGTCTCTCTTTCAACTA
GCAGCTGCTAAGCCATGGCAACGACGACATCATCACCTCACTCACTGTTT
CTCCAGAACCGTAATAGCCACCCACTCAATAAAAACAATCTCGCATCTTT
CACCAACCTTAAAAAGATCAATTTTTTTAACACCAAAAGAGCCATTTCAG
TCACCTGCTCCGCCGCATCAGCACCAACCCAAGATCGAACGGCGGCCCAG
ATCCAATCCGGGCAAGAAGACCGGGTCTTCAACTTCGCTGCGGGCCCCGC
TAATCTCCCGGAGAAAGTTCTACTCAAGGCCCAATCGGAGCTTTACAACT
GGCGCGGATCTGGCATGAGCGTGATGGAAATGAGCCATAGAGGTAAAGAA
TTCAAGTCCATTATTGAAAAAGCTGAATCGGATCTTAGAGCCCTCTTGAA
TATTCCCCAAGAATATTCTGTTTTGTTCTTGCAAGGCGGCGCTACGACAC
AGTTCGCCGCCGTTCCATTGAATTTGTGTACACCTAATGACCCGGTCGAT
TATATCGTCACCGGGTCGTGGAGTGACAAAGCTTTTAAAGAAGCGCAAAA
AATTTTGCAACCCACAAGTGATTTGGTCTGGGAAAAAGCTGAAAAGAACA
CA
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