DC887594

Overview
NameDC887594
Unique NameDC887594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33C_DICDI (Histone H3.3 type c OS=Dictyostelium discoideum GN=H3c PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 57/76 (75.00%), Postives = 59/76 (77.63%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLI+KLPFQRLVREIAQ+FKTDLRF                VGLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:   61 LLIKKLPFQRLVREIAQEFKTDLRFQAAAIEALQEATEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRGERA 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33B_DICDI (Histone H3.3 type b OS=Dictyostelium discoideum GN=H3b PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 57/76 (75.00%), Postives = 59/76 (77.63%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLI+KLPFQRLVREIAQ+FKTDLRF                VGLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:   61 LLIKKLPFQRLVREIAQEFKTDLRFQAAAIQALQEASEAYLVGLFEDTNLCAIHAKRVTIMVKDIQLARRIRGERA 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 56/76 (73.68%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 55/76 (72.37%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_LODEL (Histone H3.3 OS=Lodderomyces elongisporus GN=HHT3 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.215e-22
Identity = 55/76 (72.37%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFK+DLRF                VGLFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33L3_CAEEL (Putative histone H3.3-like type 3 OS=Caenorhabditis elegans GN=his-69 PE=5 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.215e-22
Identity = 55/75 (73.33%), Postives = 57/75 (76.00%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LL+RKLPFQRLVREIAQD K DLRF                VGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER
Sbjct:   52 LLLRKLPFQRLVREIAQDVKQDLRFQSAAIQALQEASEYFLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGER 126          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_EUPCR (Histone H3 OS=Euplotes crassus PE=3 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 4.199e-22
Identity = 55/76 (72.37%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQ+FK DLRF                V LFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:   61 LLIRKLPFQRLVREIAQEFKGDLRFQSSAVLALQEAAEAYLVSLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.199e-22
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.199e-22
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_PICST (Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 55/76 (72.37%), Postives = 57/76 (75.00%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
The following BLAST results are available for this feature:
BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
H33C_DICDI6.478e-2375.00Histone H3.3 type c OS=Dictyostelium discoideum GN... [more]
H33B_DICDI6.478e-2375.00Histone H3.3 type b OS=Dictyostelium discoideum GN... [more]
H31_LODEL1.105e-2273.68Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H31_CANAL2.462e-2272.37Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H33_LODEL3.215e-2272.37Histone H3.3 OS=Lodderomyces elongisporus GN=HHT3 ... [more]
H33L3_CAEEL3.215e-2273.33Putative histone H3.3-like type 3 OS=Caenorhabditi... [more]
H3_EUPCR4.199e-2272.37Histone H3 OS=Euplotes crassus PE=3 SV=3[more]
H33_SCHPO4.199e-2271.05Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]
H31_SCHPO4.199e-2271.05Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H31_PICST5.484e-2272.37Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionDC887594 EIC Citrus sinensis cDNA clone EIC0606 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bp
TAGATTAAAAACCCTCGAAAACATTTTAACAAACACCTTAGATACATACT
AGACCCGATCTAATCCATCGGATAGACATCCAAACATTCATCTAAACCCC
AAATATTGACCGAAAGACTAACATCGCAGTAAGAGGAACAAAATAAATTA
AATCAGAAAGTTCCTAAGCCCTTTCACCCCTGATCCGCCTAGCAAGCTGA
ATGTCCTTGGGCATAATAGTGACCCTCTTAGCATGAATAGCGCAGAGGTT
GGTGTCCTCGAACAGCCCAACAAGATAAGCCTCAGCAGCCTCCTGAAGTG
CAGCAACAGCGCTGCTCTGGAACCTCAGATCCGTCTTGAAATCCTGAGCG
ATTTCCCTCACCAATCTCTGGAACGGAAGCTTCCTAATAAGAAGC
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