DC887594

Overview
NameDC887594
Unique NameDC887594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_PICGU (Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 55/76 (72.37%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136
[Close]
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_DEBHA (Histone H3.1/H3.2 OS=Debaryomyces hansenii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 55/76 (72.37%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136
[Close]
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_CANAL (Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 7.163e-22
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = -2 
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFK+DLRF                VGLFEDTNLCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136
[Close]
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_CRYNE (Histone H3 OS=Cryptococcus neoformans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNL AIHAKRVTI PKD+QLARR+RGER+
Sbjct:   63 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDLQLARRLRGERS 138
[Close]
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_PENFN (Histone H3 OS=Penicillium funiculosum GN=HHT1 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFK+DLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_NEOFI (Histone H3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hht1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFK+DLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_EMENI (Histone H3 OS=Emericella nidulans GN=hhtA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFK+DLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_COCIM (Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFK+DLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_ASPTN (Histone H3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hht1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFK+DLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
[Close]
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_ASPOR (Histone H3 OS=Aspergillus oryzae GN=hhtA PE=3 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 54/76 (71.05%), Postives = 57/76 (75.00%), Query Frame = -2 
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFK+DLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGERS 136
The following BLAST results are available for this feature:
BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
H31_PICGU5.484e-2272.37Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1... [more]
H31_DEBHA5.484e-2272.37Histone H3.1/H3.2 OS=Debaryomyces hansenii GN=HHT1... [more]
H33_CANAL7.163e-2271.05Histone H3.3 OS=Candida albicans GN=HHT3 PE=3 SV=3[more]
H3_CRYNE1.222e-2171.05Histone H3 OS=Cryptococcus neoformans GN=HHT1 PE=3... [more]
H3_PENFN1.596e-2171.05Histone H3 OS=Penicillium funiculosum GN=HHT1 PE=3... [more]
H3_NEOFI1.596e-2171.05Histone H3 OS=Neosartorya fischeri (strain ATCC 10... [more]
H3_EMENI1.596e-2171.05Histone H3 OS=Emericella nidulans GN=hhtA PE=3 SV=... [more]
H3_COCIM1.596e-2171.05Histone H3 OS=Coccidioides immitis GN=HHT1 PE=3 SV... [more]
H3_ASPTN1.596e-2171.05Histone H3 OS=Aspergillus terreus (strain NIH 2624... [more]
H3_ASPOR1.596e-2171.05Histone H3 OS=Aspergillus oryzae GN=hhtA PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionDC887594 EIC Citrus sinensis cDNA clone EIC0606 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bp
TAGATTAAAAACCCTCGAAAACATTTTAACAAACACCTTAGATACATACT
AGACCCGATCTAATCCATCGGATAGACATCCAAACATTCATCTAAACCCC
AAATATTGACCGAAAGACTAACATCGCAGTAAGAGGAACAAAATAAATTA
AATCAGAAAGTTCCTAAGCCCTTTCACCCCTGATCCGCCTAGCAAGCTGA
ATGTCCTTGGGCATAATAGTGACCCTCTTAGCATGAATAGCGCAGAGGTT
GGTGTCCTCGAACAGCCCAACAAGATAAGCCTCAGCAGCCTCCTGAAGTG
CAGCAACAGCGCTGCTCTGGAACCTCAGATCCGTCTTGAAATCCTGAGCG
ATTTCCCTCACCAATCTCTGGAACGGAAGCTTCCTAATAAGAAGC
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