DC887594

Overview
NameDC887594
Unique NameDC887594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_MARPO (Histone H3 OS=Marchantia polymorpha PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 54/75 (72.00%), Postives = 56/75 (74.67%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVREIAQDFK+DLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_MAGGR (Histone H3 OS=Magnaporthe grisea GN=HHT1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 54/75 (72.00%), Postives = 56/75 (74.67%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVREIAQDFK+DLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_GIBZE (Histone H3 OS=Gibberella zeae GN=HHT1 PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 54/75 (72.00%), Postives = 56/75 (74.67%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVREIAQDFK+DLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_CHAGB (Histone H3 OS=Chaetomium globosum GN=HHT1 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.084e-21
Identity = 54/75 (72.00%), Postives = 56/75 (74.67%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVREIAQDFK+DLRF                V LFEDTNLCAIHAKRVTI  KDIQLARR+RGER
Sbjct:   61 LLIRKLPFQRLVREIAQDFKSDLRFQSSAIGALQESVESYLVSLFEDTNLCAIHAKRVTIQSKDIQLARRLRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_GUITH (Histone H3 OS=Guillardia theta PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 2.722e-21
Identity = 53/74 (71.62%), Postives = 56/74 (75.68%), Query Frame = -2
Query:  173 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 394
            LLIRKLPFQRLVRE+AQD+K+DLRF                V LFEDTNLCAIHAKRVTIMPKDI LARRIRGE
Sbjct:   60 LLIRKLPFQRLVRELAQDYKSDLRFQNSAVLALQEASESYLVNLFEDTNLCAIHAKRVTIMPKDIYLARRIRGE 133          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 54/75 (72.00%), Postives = 55/75 (73.33%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHLARRLRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_USTMA (Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 54/76 (71.05%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNL AIHAKRVTI PKDI LARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H32_USTMA (Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 54/75 (72.00%), Postives = 55/75 (73.33%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLVSLFEDTNLAAIHAKRVTIQPKDIALARRLRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_YARLI (Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.034e-20
Identity = 53/74 (71.62%), Postives = 54/74 (72.97%), Query Frame = -2
Query:  173 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNLCAIHAKRVTI  KDI LARR+RGE
Sbjct:   66 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIHLARRLRGE 139          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_ZYGBA (Histone H3 OS=Zygosaccharomyces bailii GN=HHT1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
The following BLAST results are available for this feature:
BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
H3_MARPO2.084e-2172.00Histone H3 OS=Marchantia polymorpha PE=3 SV=3[more]
H3_MAGGR2.084e-2172.00Histone H3 OS=Magnaporthe grisea GN=HHT1 PE=3 SV=1[more]
H3_GIBZE2.084e-2172.00Histone H3 OS=Gibberella zeae GN=HHT1 PE=3 SV=3[more]
H3_CHAGB2.084e-2172.00Histone H3 OS=Chaetomium globosum GN=HHT1 PE=2 SV=... [more]
H3_GUITH2.722e-2171.62Histone H3 OS=Guillardia theta PE=3 SV=3[more]
H3_MORAP3.555e-2172.00Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_USTMA3.555e-2171.05Histone H3.1 OS=Ustilago maydis GN=HHT1 PE=3 SV=3[more]
H32_USTMA4.643e-2172.00Histone H3.2 OS=Ustilago maydis GN=HHT2 PE=3 SV=3[more]
H3_YARLI1.034e-2071.62Histone H3 OS=Yarrowia lipolytica GN=HHT1 PE=3 SV=... [more]
H3_ZYGBA1.764e-2069.74Histone H3 OS=Zygosaccharomyces bailii GN=HHT1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionDC887594 EIC Citrus sinensis cDNA clone EIC0606 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bp
TAGATTAAAAACCCTCGAAAACATTTTAACAAACACCTTAGATACATACT
AGACCCGATCTAATCCATCGGATAGACATCCAAACATTCATCTAAACCCC
AAATATTGACCGAAAGACTAACATCGCAGTAAGAGGAACAAAATAAATTA
AATCAGAAAGTTCCTAAGCCCTTTCACCCCTGATCCGCCTAGCAAGCTGA
ATGTCCTTGGGCATAATAGTGACCCTCTTAGCATGAATAGCGCAGAGGTT
GGTGTCCTCGAACAGCCCAACAAGATAAGCCTCAGCAGCCTCCTGAAGTG
CAGCAACAGCGCTGCTCTGGAACCTCAGATCCGTCTTGAAATCCTGAGCG
ATTTCCCTCACCAATCTCTGGAACGGAAGCTTCCTAATAAGAAGC
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