DC887594

Overview
NameDC887594
Unique NameDC887594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_YEAST (Histone H3 OS=Saccharomyces cerevisiae GN=HHT1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_KLULA (Histone H3 OS=Kluyveromyces lactis GN=HHT1 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_CANGA (Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_ASHGO (Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                V LFEDTNL AIHAKRVTI  KDI+LARR+RGER+
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_TETTH (Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.009e-20
Identity = 51/75 (68.00%), Postives = 56/75 (74.67%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVR+IA +FK +LRF                VGLFEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:   61 LLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_TETPY (Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.009e-20
Identity = 51/75 (68.00%), Postives = 56/75 (74.67%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVR+IA +FK +LRF                VGLFEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:   61 LLIRKLPFQRLVRDIAHEFKAELRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3L_MOUSE (Putative histone H3-like OS=Mus musculus PE=5 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.930e-20
Identity = 52/76 (68.42%), Postives = 55/76 (72.37%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLI KLPFQRLV+EIAQDFKTDLRF                VGLFEDTNLCAIHAK VT++PKDIQLA  I GERA
Sbjct:   60 LLIHKLPFQRLVQEIAQDFKTDLRFQSAAIGALQEASEANRVGLFEDTNLCAIHAKCVTVIPKDIQLAHSILGERA 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_ENTHI (Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20
Identity = 51/75 (68.00%), Postives = 55/75 (73.33%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LL+RK PFQ LVREIAQ  K+DLRF                VGLFEDTNLCAIHAKR+TIMPKD+QLARRIRGER
Sbjct:   60 LLLRKAPFQALVREIAQVSKSDLRFQSAAISALQEAAEAYLVGLFEDTNLCAIHAKRITIMPKDMQLARRIRGER 134          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_TETPY (Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.756e-20
Identity = 50/75 (66.67%), Postives = 55/75 (73.33%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVR+IA + K D+RF                VGLFEDTNLCAIHA+RVTIM KD+QLARRIRGER
Sbjct:   61 LLIRKLPFQRLVRDIAMEMKNDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDMQLARRIRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3L4_ARATH (Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g12910 PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19
Identity = 48/75 (64.00%), Postives = 55/75 (73.33%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            L+IRKLPFQRLV+EIAQ  K DLRF                VG+FEDTNLCA+HAKR TIMPKDIQLA+R+RG+R
Sbjct:   56 LVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTIMPKDIQLAKRLRGDR 130          
The following BLAST results are available for this feature:
BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
H3_YEAST1.764e-2069.74Histone H3 OS=Saccharomyces cerevisiae GN=HHT1 PE=... [more]
H3_KLULA1.764e-2069.74Histone H3 OS=Kluyveromyces lactis GN=HHT1 PE=3 SV... [more]
H3_CANGA1.764e-2069.74Histone H3 OS=Candida glabrata GN=HHT1 PE=3 SV=2[more]
H3_ASHGO1.764e-2069.74Histone H3 OS=Ashbya gossypii GN=HHT1 PE=3 SV=3[more]
H31_TETTH3.009e-2068.00Histone H3 OS=Tetrahymena thermophila GN=HHT1 PE=1... [more]
H31_TETPY3.009e-2068.00Histone H3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H3L_MOUSE3.930e-2068.42Putative histone H3-like OS=Mus musculus PE=5 SV=2[more]
H3_ENTHI6.704e-2068.00Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=... [more]
H33_TETPY8.756e-2066.67Histone H3.3 OS=Tetrahymena pyriformis PE=1 SV=2[more]
H3L4_ARATH1.951e-1964.00Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g1... [more]

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Properties
Property NameValue
Genbank descriptionDC887594 EIC Citrus sinensis cDNA clone EIC0606 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bp
TAGATTAAAAACCCTCGAAAACATTTTAACAAACACCTTAGATACATACT
AGACCCGATCTAATCCATCGGATAGACATCCAAACATTCATCTAAACCCC
AAATATTGACCGAAAGACTAACATCGCAGTAAGAGGAACAAAATAAATTA
AATCAGAAAGTTCCTAAGCCCTTTCACCCCTGATCCGCCTAGCAAGCTGA
ATGTCCTTGGGCATAATAGTGACCCTCTTAGCATGAATAGCGCAGAGGTT
GGTGTCCTCGAACAGCCCAACAAGATAAGCCTCAGCAGCCTCCTGAAGTG
CAGCAACAGCGCTGCTCTGGAACCTCAGATCCGTCTTGAAATCCTGAGCG
ATTTCCCTCACCAATCTCTGGAACGGAAGCTTCCTAATAAGAAGC
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