DC887594
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H34_TETTH (Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19 Identity = 49/75 (65.33%), Postives = 55/75 (73.33%), Query Frame = -2 Query: 170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394 LLIRKLPFQRLVR+IA + K+D+RF VGLFEDTNLCAIHA+RVTIM KD+ LARRIRGER Sbjct: 61 LLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_TETTH (Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19 Identity = 49/75 (65.33%), Postives = 55/75 (73.33%), Query Frame = -2 Query: 170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394 LLIRKLPFQRLVR+IA + K+D+RF VGLFEDTNLCAIHA+RVTIM KD+ LARRIRGER Sbjct: 61 LLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H36_STYLE (Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H3-6 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15 Identity = 43/62 (69.35%), Postives = 46/62 (74.19%), Query Frame = -2 Query: 209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394 LLIRKLPFQRLVREIAQ++K+DLRF VGLFEDTNLCAIHAKRVTIMP Sbjct: 53 LLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H35_STYLE (Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H3-5 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15 Identity = 43/62 (69.35%), Postives = 46/62 (74.19%), Query Frame = -2 Query: 209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394 LLIRKLPFQRLVREIAQ++K+DLRF VGLFEDTNLCAIHAKRVTIMP Sbjct: 53 LLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 114
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_STYLE (Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H3-1 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15 Identity = 43/62 (69.35%), Postives = 46/62 (74.19%), Query Frame = -2 Query: 209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394 LLIRKLPFQRLVREIAQ++K+DLRF VGLFEDTNLCAIHAKRVTIMP Sbjct: 53 LLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_STYLE (Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H3-3 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15 Identity = 43/62 (69.35%), Postives = 44/62 (70.97%), Query Frame = -2 Query: 209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394 LLIRKLPFQRLVREIA +FK DLRF VGLFEDTNLCAIHAKRVTIMP Sbjct: 53 LLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 114
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33L1_CAEEL (Histone H3.3-like type 1 OS=Caenorhabditis elegans GN=his-70 PE=2 SV=3) HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15 Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = -2 Query: 194 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQL 394 LL+RKLPFQRLVRE+AQ+ ++RF +GLFEDTNLCAIHAKRVTIMPKD+Q+ Sbjct: 59 LLVRKLPFQRLVREVAQEIMPNVRFQSAAIQALHEAAEAYLIGLFEDTNLCAIHAKRVTIMPKDMQV 125
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H34_STYLE (Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H3-4 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.481e-15 Identity = 42/62 (67.74%), Postives = 44/62 (70.97%), Query Frame = -2 Query: 209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394 LLIRKLPFQRLVREIA D+K+DLRF VGLFEDTNLCAIHA RVTIMP Sbjct: 51 LLIRKLPFQRLVREIASDYKSDLRFQSSAVAAIQEAAEAYMVGLFEDTNLCAIHAGRVTIMP 112
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H38_STYLE (Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H3-8 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14 Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = -2 Query: 209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394 LLIRKLPFQRLVREIA ++K DLRF +GLFEDTNLCAIH KRVTIMP Sbjct: 52 LLIRKLPFQRLVREIASEYKNDLRFQSSAVLALQEAAEAYMIGLFEDTNLCAIHGKRVTIMP 113
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_NEUCR (Histone H3-like centromeric protein cse-4 OS=Neurospora crassa GN=cse-4 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14 Identity = 45/76 (59.21%), Postives = 50/76 (65.79%), Query Frame = -2 Query: 176 LLIRKLPFQRLVREIAQDFKT---DLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 394 LL+ KLPF RLVREIA F+ ++R+ V LFEDTNLCAIHAKRVTIM KDIQLARRIRG Sbjct: 72 LLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTIMQKDIQLARRIRG 147 The following BLAST results are available for this feature:
BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bpback to top |