DC887594

Overview
NameDC887594
Unique NameDC887594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H34_TETTH (Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19
Identity = 49/75 (65.33%), Postives = 55/75 (73.33%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVR+IA + K+D+RF                VGLFEDTNLCAIHA+RVTIM KD+ LARRIRGER
Sbjct:   61 LLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_TETTH (Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19
Identity = 49/75 (65.33%), Postives = 55/75 (73.33%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRLVR+IA + K+D+RF                VGLFEDTNLCAIHA+RVTIM KD+ LARRIRGER
Sbjct:   61 LLIRKLPFQRLVRDIAMEMKSDIRFQSQAILALQEAAEAYLVGLFEDTNLCAIHARRVTIMTKDLHLARRIRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H36_STYLE (Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H3-6 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 43/62 (69.35%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394
            LLIRKLPFQRLVREIAQ++K+DLRF                VGLFEDTNLCAIHAKRVTIMP
Sbjct:   53 LLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H35_STYLE (Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H3-5 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 43/62 (69.35%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394
            LLIRKLPFQRLVREIAQ++K+DLRF                VGLFEDTNLCAIHAKRVTIMP
Sbjct:   53 LLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_STYLE (Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H3-1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 43/62 (69.35%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394
            LLIRKLPFQRLVREIAQ++K+DLRF                VGLFEDTNLCAIHAKRVTIMP
Sbjct:   53 LLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_STYLE (Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H3-3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 43/62 (69.35%), Postives = 44/62 (70.97%), Query Frame = -2
Query:  209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394
            LLIRKLPFQRLVREIA +FK DLRF                VGLFEDTNLCAIHAKRVTIMP
Sbjct:   53 LLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33L1_CAEEL (Histone H3.3-like type 1 OS=Caenorhabditis elegans GN=his-70 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = -2
Query:  194 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQL 394
            LL+RKLPFQRLVRE+AQ+   ++RF                +GLFEDTNLCAIHAKRVTIMPKD+Q+
Sbjct:   59 LLVRKLPFQRLVREVAQEIMPNVRFQSAAIQALHEAAEAYLIGLFEDTNLCAIHAKRVTIMPKDMQV 125          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H34_STYLE (Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H3-4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.481e-15
Identity = 42/62 (67.74%), Postives = 44/62 (70.97%), Query Frame = -2
Query:  209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394
            LLIRKLPFQRLVREIA D+K+DLRF                VGLFEDTNLCAIHA RVTIMP
Sbjct:   51 LLIRKLPFQRLVREIASDYKSDLRFQSSAVAAIQEAAEAYMVGLFEDTNLCAIHAGRVTIMP 112          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H38_STYLE (Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H3-8 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = -2
Query:  209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394
            LLIRKLPFQRLVREIA ++K DLRF                +GLFEDTNLCAIH KRVTIMP
Sbjct:   52 LLIRKLPFQRLVREIASEYKNDLRFQSSAVLALQEAAEAYMIGLFEDTNLCAIHGKRVTIMP 113          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_NEUCR (Histone H3-like centromeric protein cse-4 OS=Neurospora crassa GN=cse-4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 45/76 (59.21%), Postives = 50/76 (65.79%), Query Frame = -2
Query:  176 LLIRKLPFQRLVREIAQDFKT---DLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 394
            LL+ KLPF RLVREIA  F+    ++R+                V LFEDTNLCAIHAKRVTIM KDIQLARRIRG
Sbjct:   72 LLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTIMQKDIQLARRIRG 147          
The following BLAST results are available for this feature:
BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
H34_TETTH1.951e-1965.33Histone H3.4 OS=Tetrahymena thermophila GN=HHT4 PE... [more]
H33_TETTH1.951e-1965.33Histone H3.3 OS=Tetrahymena thermophila GN=HHT3 PE... [more]
H36_STYLE1.002e-1569.35Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H35_STYLE1.002e-1569.35Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H31_STYLE1.002e-1569.35Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H33_STYLE2.232e-1569.35Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H33L1_CAEEL2.232e-1559.70Histone H3.3-like type 1 OS=Caenorhabditis elegans... [more]
H34_STYLE8.481e-1567.74Histone H3-4 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H38_STYLE1.447e-1464.52Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H... [more]
CENPA_NEUCR1.447e-1459.21Histone H3-like centromeric protein cse-4 OS=Neuro... [more]

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Properties
Property NameValue
Genbank descriptionDC887594 EIC Citrus sinensis cDNA clone EIC0606 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bp
TAGATTAAAAACCCTCGAAAACATTTTAACAAACACCTTAGATACATACT
AGACCCGATCTAATCCATCGGATAGACATCCAAACATTCATCTAAACCCC
AAATATTGACCGAAAGACTAACATCGCAGTAAGAGGAACAAAATAAATTA
AATCAGAAAGTTCCTAAGCCCTTTCACCCCTGATCCGCCTAGCAAGCTGA
ATGTCCTTGGGCATAATAGTGACCCTCTTAGCATGAATAGCGCAGAGGTT
GGTGTCCTCGAACAGCCCAACAAGATAAGCCTCAGCAGCCTCCTGAAGTG
CAGCAACAGCGCTGCTCTGGAACCTCAGATCCGTCTTGAAATCCTGAGCG
ATTTCCCTCACCAATCTCTGGAACGGAAGCTTCCTAATAAGAAGC
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