DC887594

Overview
NameDC887594
Unique NameDC887594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_CANAL (Histone H3-like centromeric protein CSE4 OS=Candida albicans GN=CSE4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.447e-14
Identity = 46/77 (59.74%), Postives = 50/77 (64.94%), Query Frame = -2
Query:  173 LLIRKLPFQRLVREIAQDF---KTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 394
            LLIRKLPF RLVREI+ DF      LR+                + L EDTNLCAIHAKRVTIM KDIQLARRIRG+
Sbjct:  131 LLIRKLPFARLVREISLDFVGPSYGLRWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQLARRIRGQ 207          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H39_STYLE (Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H3-2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.467e-14
Identity = 42/62 (67.74%), Postives = 43/62 (69.35%), Query Frame = -2
Query:  209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394
            LLIRKLPFQRLVREIA +FK DLRF                VGLFEDTNL AIHAKRVTIMP
Sbjct:   53 LLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTIMP 114          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H37_STYLE (Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H3-7 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.467e-14
Identity = 42/62 (67.74%), Postives = 43/62 (69.35%), Query Frame = -2
Query:  209 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMP 394
            LLIRKLPFQRLVREIA +FK DLRF                VGLFEDTNL AIHAKRVTIMP
Sbjct:   53 LLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTIMP 114          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_PICFA (Histone H3-like centromeric protein CSE4 OS=Pichia farinosa GN=CSE4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.089e-13
Identity = 43/76 (56.58%), Postives = 50/76 (65.79%), Query Frame = -2
Query:  176 LLIRKLPFQRLVREIAQDF---KTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 394
            LLIRKLPF RLV+E+A+++      +R+                V L EDTNLCAIHAKRVTIM KDIQLARRIRG
Sbjct:   81 LLIRKLPFARLVKEVAENYIGADYGIRWQSNAVLALQEACEAFLVHLLEDTNLCAIHAKRVTIMQKDIQLARRIRG 156          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_SCHPO (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe GN=cnp1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 44/79 (55.70%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  176 LLIRKLPFQRLVREIAQDF----KTD--LRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 394
            LLI++LPF R+VREI+ +F     TD  LR+                V LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct:   41 LLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_YEAST (Histone H3-like centromeric protein CSE4 OS=Saccharomyces cerevisiae GN=CSE4 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = -2
Query:  173 LLIRKLPFQRLVREIAQDFKT---DLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 394
            LLI K+PF RLV+E+  +F T   DLR+                VGL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:  151 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 227          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_DANRE (Histone H3-like centromeric protein A OS=Danio rerio GN=cenpa PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 39/74 (52.70%), Postives = 46/74 (62.16%), Query Frame = -2
Query:  176 LLIRKLPFQRLVREIAQDFKTD-LRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 394
            LL+RK PF RLVRE+ Q F  + + +                V LF D NLCAIHAKRVT+ P+DIQLARRIRG
Sbjct:   68 LLLRKAPFSRLVREVCQMFSREHMMWQGYALMALQEAAEAFMVRLFSDANLCAIHAKRVTLFPRDIQLARRIRG 141          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_CANGA (Histone H3-like centromeric protein CSE4 OS=Candida glabrata GN=CSE4 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.939e-12
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = -2
Query:  173 LLIRKLPFQRLVREIAQDF---KTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 394
            LLI+K+PF +LV+E+ ++F     DLR+                VGL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:  162 LLIQKIPFAKLVKEVTEEFAGESQDLRWQSMAILALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 238          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_YARLI (Histone H3-like centromeric protein CSE4 OS=Yarrowia lipolytica GN=CSE4 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.776e-12
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = -2
Query:  176 LLIRKLPFQRLVREIAQDFKT----DLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 394
            LLI KLPF R+VRE+A ++      +L++                V LFED NLCAIHAKRVTIM KD+QLARRIRG
Sbjct:   68 LLIAKLPFARVVREVALNYLGSEYGNLQWQSMALLALQEAAEAFLVHLFEDVNLCAIHAKRVTIMQKDMQLARRIRG 144          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_TETTH (Histone H3-like centromeric protein CNA1 OS=Tetrahymena thermophila GN=CNA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTD--LRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLIRKLPFQRL+REI+     +  LR+                V  FED N CA+HAKRVT+M KD+ LA RIRG++
Sbjct:  100 LLIRKLPFQRLIREISTRMTEEDSLRWTSFALVLLQTVVEDYMVSFFEDANACALHAKRVTLMSKDLALAARIRGQK 176          
The following BLAST results are available for this feature:
BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CENPA_CANAL1.447e-1459.74Histone H3-like centromeric protein CSE4 OS=Candid... [more]
H39_STYLE2.467e-1467.74Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H37_STYLE2.467e-1467.74Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H... [more]
CENPA_PICFA2.089e-1356.58Histone H3-like centromeric protein CSE4 OS=Pichia... [more]
CENPA_SCHPO3.563e-1355.70Histone H3-like centromeric protein cnp1 OS=Schizo... [more]
CENPA_YEAST1.354e-1251.95Histone H3-like centromeric protein CSE4 OS=Saccha... [more]
CENPA_DANRE3.016e-1252.70Histone H3-like centromeric protein A OS=Danio rer... [more]
CENPA_CANGA3.939e-1249.35Histone H3-like centromeric protein CSE4 OS=Candid... [more]
CENPA_YARLI8.776e-1253.25Histone H3-like centromeric protein CSE4 OS=Yarrow... [more]
CENPA_TETTH1.497e-1149.35Histone H3-like centromeric protein CNA1 OS=Tetrah... [more]

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Properties
Property NameValue
Genbank descriptionDC887594 EIC Citrus sinensis cDNA clone EIC0606 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bp
TAGATTAAAAACCCTCGAAAACATTTTAACAAACACCTTAGATACATACT
AGACCCGATCTAATCCATCGGATAGACATCCAAACATTCATCTAAACCCC
AAATATTGACCGAAAGACTAACATCGCAGTAAGAGGAACAAAATAAATTA
AATCAGAAAGTTCCTAAGCCCTTTCACCCCTGATCCGCCTAGCAAGCTGA
ATGTCCTTGGGCATAATAGTGACCCTCTTAGCATGAATAGCGCAGAGGTT
GGTGTCCTCGAACAGCCCAACAAGATAAGCCTCAGCAGCCTCCTGAAGTG
CAGCAACAGCGCTGCTCTGGAACCTCAGATCCGTCTTGAAATCCTGAGCG
ATTTCCCTCACCAATCTCTGGAACGGAAGCTTCCTAATAAGAAGC
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